Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00198 ATGAATTCGAATTTTGGGAAGAATTTTGAGTTCGATCTTGGGTTTGGGTCCAATCGCTCCACATCTCTCAACGAGCAGAAAAACCGAACTCCTTCGTATTCTTCTTCTGGCTCTAACTTTTCATCTTCGCAACCGAAACCGGCTTGGCAGCCTAATCGGCCATCGTGGACCCACCAGCCGGCGCCTAATCTGGCGAATGGGCCTGTTACCATGGTCGGCGATATATCAGGGAAAAGTTGGGGTTCGACCGTAAACTCTGGTTCCAACTCTGGGATCGGAATTATCGATAAAAATCCAAATTTATTTGGTGATTTGCTCGATTCTACTTTGGGGCAGGGGAAAAATAATAGCAATGTTCCTCTAAAGAACGCTACACCTCCTTCCTTGGCCTCATCAAATAAAAATACATTTTCGATGGGGTATATTGCCAATTCACTCCCAAAAACTGGAAGTAGCTCCACAAATGTGAATCGGGGTTCGTCTGATAATTTTGGTAGTTATACTAGTGGATCAAATAATTTCAAGAGTAATCTAGTAAACAATGATAAGAGTTCGAACCTCGGAGGTCCATCCATTCGAAGTATGGGTGGTGTTGGGAGCAGCGGCATGAGCTCTAACAAGGATCCATTTGTTTCTCTGGTTGATTTCAGATCAAAACAATCTGGTGGTTTGAACTCATCGAGTAATAAGGGAGATTCTACAAGTGAAAAAGTTAATGTGGTTGATGATGCTTTTGGGGGTTTCCAAAATGCACCAAAATCAAGCACAAACTCATTCGAATCCACTACATTCAATGGAAGTAGTAATGCTTTTACGAAGCCGAAGGTGGATTATTCAAACGTGAGTGATTTTGGAATGCCTGATCTGGATTTTGCCTCAAAGACTCAGGCTCCAGTTCAACCAATTGCTGCCGATCCACTCGACATGTTGTTTAGCACATCCTCTGCTCCAAAGACTTCTGAAGTAACGGGAGGGAAGTCGGAAATTGATGATTGGGGATTGGATTCAGGTTTTGGAGGAGGAAGTGAAGATGCTGGCGGTTCAACTACTGAGCTTGAGGGGCTTCCACCTCCTCCGGCTGGCGTCACCTCCACCTTGGCAAAGGATAAGGGAATGGATAATTACAAGCAGGGACAGTATGCAGATGCTATTAAGTGGCTTTCTTGGGCTGCAATTCTTATTGAGAAATCTGGAAATGACGCTGCCACCATGGAGGTTTTGTCTAGTAGAGCTTCATGCTACAAAGAAGTCGGGGAGTATAAGAAAGCTGTGGCAGATTGTACAAAGGTCTTAGAGCGCAGCGAGGGCAATGTAAGTGTGCTAGTACAACGAGCACTCCTTTACGAAAGTATGGAAAAGTACAAACTTGGAGCAGAGGACCTTAGGACTGTTCTGAAGATCGATCCTAGCAATAGACTCGCAAGAAGCACCATTCATCGCCTGACGAAAATGGCCGGATAG 1461 44.63 MNSNFGKNFEFDLGFGSNRSTSLNEQKNRTPSYSSSGSNFSSSQPKPAWQPNRPSWTHQPAPNLANGPVTMVGDISGKSWGSTVNSGSNSGIGIIDKNPNLFGDLLDSTLGQGKNNSNVPLKNATPPSLASSNKNTFSMGYIANSLPKTGSSSTNVNRGSSDNFGSYTSGSNNFKSNLVNNDKSSNLGGPSIRSMGGVGSSGMSSNKDPFVSLVDFRSKQSGGLNSSSNKGDSTSEKVNVVDDAFGGFQNAPKSSTNSFESTTFNGSSNAFTKPKVDYSNVSDFGMPDLDFASKTQAPVQPIAADPLDMLFSTSSAPKTSEVTGGKSEIDDWGLDSGFGGGSEDAGGSTTELEGLPPPPAGVTSTLAKDKGMDNYKQGQYADAIKWLSWAAILIEKSGNDAATMEVLSSRASCYKEVGEYKKAVADCTKVLERSEGNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRLARSTIHRLTKMAG 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2493653 2495394 + Bda001067.1 Bda13g00198 18329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00198 486 MobiDBLite consensus disorder prediction 1 72 - -
Bda13g00198 486 PANTHER OS03G0340700 PROTEIN 7 485 - -
Bda13g00198 486 Pfam Tetratricopeptide repeat 439 471 IPR019734 GO:0005515
Bda13g00198 486 Pfam Tetratricopeptide repeat 409 435 IPR019734 GO:0005515
Bda13g00198 486 ProSiteProfiles TPR repeat profile. 438 471 IPR019734 GO:0005515
Bda13g00198 486 MobiDBLite consensus disorder prediction 14 64 - -
Bda13g00198 486 MobiDBLite consensus disorder prediction 171 204 - -
Bda13g00198 486 SUPERFAMILY TPR-like 368 480 IPR011990 GO:0005515
Bda13g00198 486 Gene3D Tetratricopeptide repeat domain 363 485 IPR011990 GO:0005515
Bda13g00198 486 SMART tpr_5 364 397 IPR019734 GO:0005515
Bda13g00198 486 SMART tpr_5 404 437 IPR019734 GO:0005515
Bda13g00198 486 SMART tpr_5 438 471 IPR019734 GO:0005515
Bda13g00198 486 MobiDBLite consensus disorder prediction 335 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00198 - - - qlo:115994611 569.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00246 Bda-Chr6:4329650 Bda13g00198 Bda-Chr13:2493653 7.37E-09 dispersed
Bda13g00198 Bda-Chr13:2493653 Bda15g00807 Bda-Chr15:12069076 9.40E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g147 . . . . . . . . . . Cma06g01542 Cma14g01607 . Car14g01426 . Cpe08g00170 Cpe03g01349 . . . . . . . . . . . . . . . . Cone7ag0129 Cone4ag0134 . . . . . . . Bda13g00198 . . Bma02g00918 . . . Cmo14g01643 . . . . . . . . . . . . . . . . . . . . . Csa03g01491 Chy06g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008564 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00198 Bda_Chr13 FPKM 14.134821 16.019978 0.0 0.0 0.0 0.0 0.0 0.0 0.0