Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00214 ATGGCTCTACAAAAGTTTTTACCTTCTACTGATGTGACTTTGCCTAATATGAAACATTTAAGTTTTCCTACTGAGAAACGCAAGGAAACTGATGTTGCTAATTCTGAGCCTGCCCATAATGTGGAGCCTGATGTGGAGATTGACATTAGAGAAGTTTATTTTCTCATTATGCATTTTCTTTCTTCTGGGCCATGCCAAAGAACTTATGGACAGCTCTGGAATGAACTTCTTGAGCATCAACTCTTACCCAGAAGATATCATGCTTGGTATTCAAGAAATGGGGGTTACTGTGCGGATGAGAATGATGATGGTCTGTCCTTTCCTTTAAGTTACAATAAATTGGTGGAGAGGTATACCCACGTGAAAAAAGATCACTTAGTGAAGCTCCTGAAGCAGTTGCTACTATGTAAAACCTCTCCATTGCACGGCACGAATGGTGGAACTGCTCCAAATGCATATGATGTTCCTACTCTTTTGGGAACCGGGTCTTTTTCACTTTTAAGTTGTAAGTCTGTTGTGATATTTTATCAATTTTCAGCTGACAGAAATGAAAGAATTAATGAACCAACTCAACCCTCTGCGTATATGCGATGGCCCCATATGAAAGCTGATCAGGTTCGCGGATTAAGTTTGAGGGAAATTTCAGGTGGATTTTCCAGACATCAACGCGCACCTTCTATACGTGCAGCATGTTATGCCATTGCAAAGCCATCAACCATGGTACAAAAGATGCAAAATATCAAGAAACTACGGGGGCATCGAAATGCTGTCTACTGTGCAATATTTGATCGATTGGGAAGGTATGTCGTAACTGGGTCAGATGATCGCCTTGTAAAAATTTGGTCAATGGAAACTGCATATTGTTTGTCAAGCTGTCGTGGACATGAAAGATATTGTCTCCCCAAATGGGATGAAATTGTTTGTTTGTTGATTACAATAAATTTTATGATTTGGCGACTTCCTGATGGGCTGCCAATTTCGGTTTTGCGAGGGCATTCGGGTGCTGTTACAGCCATTGCATTTAGTCCAAGGCCTGGATACCAGCTTCTATCATCATCTGATGATGGAACCTGTAGGCTGTGGGATGCTAGGAACTCTTCACAACATAATCCACGAATTTACATGCCAAAGCCGTTAGATTCTGTAACTGGAAGGAGCAGTGGCTCCTCTTCTAGTACTGTTTCTCATAATCATCAAATATTTTGCTGTGCTTTTAATGCCAACGGGACCATTTTTGTCACTGGTAGCTCAGACACTCTTGCTAGGGTATGGAATGCATGTAAACCAAACATTGATAACCCAGACCAACCTAATCACGAGATAGATGTGTTAGCTGGCCATGAGAATGATGTTAATTATGTGCAATTTAGTGGATGTGCTGTGTCCTCAAAATTTATTACAGCCGACAGTGTAAAGGAAGACTGTGGTCACAGATTTAGAAATTCCTGGTTTGTTTTTTGTCCTTGTAGGTTTACTCATGACAATATAGTTACCTGTTCTCGTGATGGTAGTGCAATTATTTGGGTACCTAGATCACGCAGATCGCATGGGAAAGCTGGACGATGGACTAGGGCCTATCATTTAAAAGTACCGCCTCCACCAATGCCTCCACAACCTCCACGAGGAGGTCCTCGTCAAAGAATTCTTCCAACTCCTCGTGGTGTTAATATGATCATTTGGAGCTCAGATAACCGCTTCGTCCTTGCTGCTCTAATGGATTGTAGAATATGTGTTTGGAATGCTTCTGATGGTAGCTTAGTGCACTCTTTGACTGGTCATACAGAATCAACATATGTTCTGGATGTTCATCCTTTCAATCCTCGGATAGCTATGAGTGCGGGTTATGATGGAAAAACTATAGTTTGGGATATATGGGAAGGAACTCCTATTCAGATATACGAAATTTCTCGGTTCAAACTCGTTGATGGAAAGTTTTCATCGGATGGAACATCAATAATTCTTTCAGATGATGTTGGTCAGCTATATATATTAAGCACAGGACAAGGAGAGTCCAAACAGGATGCCAAGTATGACCAGTTCTTCCTAGGGGATTATCGTCCACTTGTCCAAGATACTTTTGGAAATGTTGTTGACCAAGAAACTCAACTTGCTCCTTACAGACGGAATATGCAAGATCTTCTTTGTGACTCAGGCATGATACCTTACCCTGAACCTTACCAGAGTATGTACCAGCAGAGACGGTTAGGAGCTCTGGGTATTGAATGGCGTCCTTCTTCTCTAAAGTTTGCCGTTGGGCCTGACTTCAGTCTGGATCCTGCATATCAGATGCTTCCTTTGGCGGACTTGGACTTATTGATTGAACCGCTTCCAGAGTTTTTCGATGCAATGGATTGGGAGCCAGAAAATGAAGTACAAAGTGATACTACTGATTCAGAGTATAATGTCCCTGAAGACTATTCTACCGGAGGAGAGCGGGGGAGTTTGAATTCGAATTCGTCCATAGACCTAGAATGCAGTGGTGGAGATACTGGAAGAGAAGATGCCCTAAGAGATCATCTTCGTAGATCAAGAAGGAAAAAACATAAGGCAGATATGGAGATCATGACATTTTCTGGAAGACGTATTAAAAGGAGGAATCTAGATGAGTATGATGGACATCCTATTAAAAGTAACAGAAATAGGAAAATGAAATTTCATTTAAAAACTTCAAAGAGGAAATTAGCATCAAAATCATTAAGGCCTCAAAGAGCTGCTGCACGCAATGCTCGTCATTTCTTTTCTAAACTAAAAGGAACATCTACTGATGTAGAGGACGAGGATGGCTCAGGAAGTGATTCATCAGATGGTGAATCTATCTTACAAGATTCGATCATCGTGAGTGATGATTCTGATAAGTCTTTGCAGAACATAACCAAGCTTTCAAAAGGAAAAGAAGTATACATGGACGAATCTGAGGATGTAGTTCAACCTTTTGAACTGCCAGAATCTCATGTGAGTTCCGTAAATAGGCGTAGGTTGATCCTCAAACTTCCAGTTAGAAATTTTAACAGGTCTTTGCCTCCAGAGAATATAATTCACAAATGTTCAAACTCGATCAATGGTGTTGGCTCATCATCAAAAGCTCCTTGGGAAGCTGCTGAGGTGAATCACAGACACACAAGCCTAGAAAAACCAAATGACTCTCTTAATGTTGACATTTCTGCTGAAGTAGGGAGATTACAAGACGAAAGTGAAGATCATTCTAATCACTCTATCCCCAACAAAAATGGCAGCATTAAATGGGGAGGATTCAAGACACGCACATCCAAGCGTCCAAGATTGGGAGAAACAGTTACTTTTGATGCACGTATGAGATCTAGTTCTTGTCTTGATGATCGTAATAATTTGGAGAGCAGCCTCCACGAACATGTAAGACCAGAAAATTATTCTGGCAATGTAATGAAAGCTGGGGAATATTCAAATGTTCAAGATATTGGAGATAGTACGGCAGAGGGAGTTTTTGAGCCAACCAGCAGCCGATCAACAAAAAATTTTGTTAAGGTTGGAGATCCTAATGAAAATCAAAATCTGGATCATGTGGCTCCTGATGATGCCACCATCTCATCTACCTGTAACGAGATTAATTCCTCTTCTGAATTGTGTAAGAGCAGTATACCTGTCTCGACAAAAATAAGGTTGAAGGCAAACATTGATCCTGCTTCGCCGAAACATGAAAGAAAATCCTTGGTAGCAAGTATGAGTAATGGTAAACATGATGTATTACCTGGAAGTCCTAAGTATCCATTATTGCCCCCTGACGATGGCATCGACAGAAGTAATTTGGATAATATGAGTGATGGTTCACAAAAAGATGATATGTTGGAAGATAAGTCAATGCACTCAAATCCTAACAAAATGTTCAGTGTCGTCTACAGAAGATTGAAGTCACACAAAGGAAGGACCAGTTTGGAGGTCGATGGAAGTGGTACACGAGATTTCTCTTCATATTTGAGCAATAACAATTCACATAATGGAATAGAGGAAAATGTAGGTACAGTTGATGTGGCCCACAGGACTCGATCATTGAGGCCAAAGGCTTGCGTAAGTGATTCAAATAATCTGAGTGACAATCTTAAGTACGAGGAAGTTTTGGACTTGGAACATATGTCACGAAATTTTCAGAATACCTCAACAAGCAGATATCAATTCAAGGATGAGGAGTGGGGATCGAAATCAATTTCAATAGTTGGACCAAGGTCTACTAGAAATAGAAGGGCAAATTCTGCTCGTGACACAAGTCCGATGGATAAAAGGAAGTCTCATCTAATAACAAGAAAAGGATCGTGGTTAATGATGTCTGTACATGAAGGTGGCTCCCGTTATATTCCCCAATTAGGGGATGAAGTTGTGTATTTGAGACAGGGGCATCAAGAATATATTGAATATTGTCGCTCAAGAGAAGTGGGGCCTTGGATTTCAATGAAGGGAACCATTAGGGCTGTCGAATACTGTAAAGTTGTTGGACTTGAGTATTCCACTGTTTGTGGATCTGGGGCTAGCTGCTGCAAGATGACACTTGAGTTTGTAGATCCTGATTCCAGTGTATTTAGTGGATCTTTCAAGTTGTCTCTTCCTGAAGAGACTAGTTTCCCAGATTTTCTTGTTGAAAGAAGTCGATTTGAAACCTCTTTACAAAGAAATTGGAGATTCCGGGATAAATGCAAAGTGTGGTGGAGAAATGAGGGGGAAGAAGATGGTAGTTGGTGGGAGGGCCGTATCACTGCTGTGGAGGCAAAATCTTCTGAATTTTCCCAAAGTCCTTGGGAGAGATATAGAATACGTTATAAGAGTGAACCAGCAGACACCCATTTGCATAGTCCTTGGGAGCTCTTTGATGATGATACACATTGGGAACAGCCTCGAATTGATTATGAATGTAAAGCCAACCTATTATCCGCCTTGAAAAAATTAGAGTTAGGTAGTACAGGCCAGGATCGATACGGAGTTCAGGAATTGAGCCGTGTTTCTCAGCGACCACAGTTTAGGAACCGGTTTCCAGTTCCATTAACTCTTGAAGTGATTCAATTAAGACTAGAGAGTGATTATTACCGGAGTATCGAAGCTTTGAAGCATGATTTTGTAGTCATGGTGTCAAATTTCGAAGCCTACTCTGCAAAGAACGAACATTTGTTAAAAAAACTAAAACGATTATCAGAGTGGTTCAATAGGACACTGTCTTCATCATAG 5187 40.83 MALQKFLPSTDVTLPNMKHLSFPTEKRKETDVANSEPAHNVEPDVEIDIREVYFLIMHFLSSGPCQRTYGQLWNELLEHQLLPRRYHAWYSRNGGYCADENDDGLSFPLSYNKLVERYTHVKKDHLVKLLKQLLLCKTSPLHGTNGGTAPNAYDVPTLLGTGSFSLLSCKSVVIFYQFSADRNERINEPTQPSAYMRWPHMKADQVRGLSLREISGGFSRHQRAPSIRAACYAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRLGRYVVTGSDDRLVKIWSMETAYCLSSCRGHERYCLPKWDEIVCLLITINFMIWRLPDGLPISVLRGHSGAVTAIAFSPRPGYQLLSSSDDGTCRLWDARNSSQHNPRIYMPKPLDSVTGRSSGSSSSTVSHNHQIFCCAFNANGTIFVTGSSDTLARVWNACKPNIDNPDQPNHEIDVLAGHENDVNYVQFSGCAVSSKFITADSVKEDCGHRFRNSWFVFCPCRFTHDNIVTCSRDGSAIIWVPRSRRSHGKAGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIIWSSDNRFVLAALMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIQIYEISRFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESKQDAKYDQFFLGDYRPLVQDTFGNVVDQETQLAPYRRNMQDLLCDSGMIPYPEPYQSMYQQRRLGALGIEWRPSSLKFAVGPDFSLDPAYQMLPLADLDLLIEPLPEFFDAMDWEPENEVQSDTTDSEYNVPEDYSTGGERGSLNSNSSIDLECSGGDTGREDALRDHLRRSRRKKHKADMEIMTFSGRRIKRRNLDEYDGHPIKSNRNRKMKFHLKTSKRKLASKSLRPQRAAARNARHFFSKLKGTSTDVEDEDGSGSDSSDGESILQDSIIVSDDSDKSLQNITKLSKGKEVYMDESEDVVQPFELPESHVSSVNRRRLILKLPVRNFNRSLPPENIIHKCSNSINGVGSSSKAPWEAAEVNHRHTSLEKPNDSLNVDISAEVGRLQDESEDHSNHSIPNKNGSIKWGGFKTRTSKRPRLGETVTFDARMRSSSCLDDRNNLESSLHEHVRPENYSGNVMKAGEYSNVQDIGDSTAEGVFEPTSSRSTKNFVKVGDPNENQNLDHVAPDDATISSTCNEINSSSELCKSSIPVSTKIRLKANIDPASPKHERKSLVASMSNGKHDVLPGSPKYPLLPPDDGIDRSNLDNMSDGSQKDDMLEDKSMHSNPNKMFSVVYRRLKSHKGRTSLEVDGSGTRDFSSYLSNNNSHNGIEENVGTVDVAHRTRSLRPKACVSDSNNLSDNLKYEEVLDLEHMSRNFQNTSTSRYQFKDEEWGSKSISIVGPRSTRNRRANSARDTSPMDKRKSHLITRKGSWLMMSVHEGGSRYIPQLGDEVVYLRQGHQEYIEYCRSREVGPWISMKGTIRAVEYCKVVGLEYSTVCGSGASCCKMTLEFVDPDSSVFSGSFKLSLPEETSFPDFLVERSRFETSLQRNWRFRDKCKVWWRNEGEEDGSWWEGRITAVEAKSSEFSQSPWERYRIRYKSEPADTHLHSPWELFDDDTHWEQPRIDYECKANLLSALKKLELGSTGQDRYGVQELSRVSQRPQFRNRFPVPLTLEVIQLRLESDYYRSIEALKHDFVVMVSNFEAYSAKNEHLLKKLKRLSEWFNRTLSSS 1728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2726423 2746722 - Bda001090.1 Bda13g00214 18345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00214 1728 Gene3D - 387 470 IPR015943 GO:0005515
Bda13g00214 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 632 IPR001680 GO:0005515
Bda13g00214 1728 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 40 1726 - -
Bda13g00214 1728 SMART WD40_4 322 362 IPR001680 GO:0005515
Bda13g00214 1728 SMART WD40_4 542 580 IPR001680 GO:0005515
Bda13g00214 1728 SMART WD40_4 583 623 IPR001680 GO:0005515
Bda13g00214 1728 SMART WD40_4 437 509 IPR001680 GO:0005515
Bda13g00214 1728 SMART WD40_4 243 282 IPR001680 GO:0005515
Bda13g00214 1728 SMART WD40_4 387 425 IPR001680 GO:0005515
Bda13g00214 1728 MobiDBLite consensus disorder prediction 1264 1279 - -
Bda13g00214 1728 MobiDBLite consensus disorder prediction 1399 1419 - -
Bda13g00214 1728 ProSiteProfiles Bromodomain profile. 1659 1711 IPR001487 GO:0005515
Bda13g00214 1728 MobiDBLite consensus disorder prediction 915 939 - -
Bda13g00214 1728 SUPERFAMILY Bromodomain 1657 1725 IPR036427 GO:0005515
Bda13g00214 1728 MobiDBLite consensus disorder prediction 17 39 - -
Bda13g00214 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 425 IPR001680 GO:0005515
Bda13g00214 1728 MobiDBLite consensus disorder prediction 1152 1182 - -
Bda13g00214 1728 MobiDBLite consensus disorder prediction 21 39 - -
Bda13g00214 1728 Gene3D - 1645 1727 IPR036427 GO:0005515
Bda13g00214 1728 Gene3D - 311 384 IPR015943 GO:0005515
Bda13g00214 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Bda13g00214 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 285 - -
Bda13g00214 1728 MobiDBLite consensus disorder prediction 1404 1419 - -
Bda13g00214 1728 MobiDBLite consensus disorder prediction 1235 1281 - -
Bda13g00214 1728 SUPERFAMILY WD40 repeat-like 241 666 IPR036322 GO:0005515
Bda13g00214 1728 ProSitePatterns Trp-Asp (WD) repeats signature. 349 363 IPR019775 -
Bda13g00214 1728 MobiDBLite consensus disorder prediction 810 825 - -
Bda13g00214 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 425 - -
Bda13g00214 1728 CDD WD40 246 623 - -
Bda13g00214 1728 ProSitePatterns Trp-Asp (WD) repeats signature. 610 624 IPR019775 -
Bda13g00214 1728 MobiDBLite consensus disorder prediction 1062 1088 - -
Bda13g00214 1728 Pfam WD domain, G-beta repeat 245 282 IPR001680 GO:0005515
Bda13g00214 1728 Pfam WD domain, G-beta repeat 395 425 IPR001680 GO:0005515
Bda13g00214 1728 Pfam WD domain, G-beta repeat 584 623 IPR001680 GO:0005515
Bda13g00214 1728 Pfam WD domain, G-beta repeat 325 362 IPR001680 GO:0005515
Bda13g00214 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 371 IPR001680 GO:0005515
Bda13g00214 1728 Gene3D - 239 300 IPR015943 GO:0005515
Bda13g00214 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 365 - -
Bda13g00214 1728 Gene3D - 476 680 IPR015943 GO:0005515
Bda13g00214 1728 MobiDBLite consensus disorder prediction 788 833 - -
Bda13g00214 1728 CDD Bromo_WDR9_I_like 1600 1728 - -
Bda13g00214 1728 PANTHER WD REPEAT DOMAIN 9 40 1726 - -
Bda13g00214 1728 MobiDBLite consensus disorder prediction 1152 1171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00214 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 2010.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00507 Bda13g00214 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00214 Bda-Chr13:2726423 Bda12g00146 Bda-Chr12:1301058 3.34E-15 dispersed
Bda11g00507 Bda-Chr11:5373182 Bda13g00214 Bda-Chr13:2726423 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41