Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00216 AGATGCAGGAACAAAGATATAAGCATATCTCAGAGCAGGGATTTATCGGCTGGTATACCGCAGTTCATAGTTGAAGTGGTGAATACGTGTGTTTGTGGATGTGATCCTTCAGAAATTCATCTTCACTGTGGCTGGTTTGCCTCTGCGAGAATTGTAAACCCTAGAATGTTCAAAAGGGTAGGGTTTGATGACTGCTTGGTGAACGAGGGGAAGCCATTGAAAAGCAGCCAAATTATCAGATTCACCTACTCTAACTCATTTATGTATCCCCTTGTTTTCAAGTCTGCAAAGTTGTGCTAA 300 42.0 RCRNKDISISQSRDLSAGIPQFIVEVVNTCVCGCDPSEIHLHCGWFASARIVNPRMFKRVGFDDCLVNEGKPLKSSQIIRFTYSNSFMYPLVFKSAKLC 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2762498 2762797 + Bda001092.1 Bda13g00216 18347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00216 99 PANTHER PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED 2 99 IPR040361 -
Bda13g00216 99 PANTHER PROTEIN TAPETUM DETERMINANT 1-LIKE 2 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00216 - - - vvi:104879204 176.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01587 Bda-Chr11:49185292 Bda13g00216 Bda-Chr13:2762498 2.48E-33 dispersed
Bda13g00216 Bda-Chr13:2762498 Bda13g01243 Bda-Chr13:34766207 1.37E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g67 . . . . . Bpe14g01100 . . . . . . . . . . . . . . . . . . Cla06g00429 Cam06g0452 Cec06g0459 Cco06g0458 Clacu06g0439 Cmu06g0440 Cre06g1217 . . . . . . . . . . . Bda13g00216 . . Bma02g00928 . . . . . . . . Cpe12g00319 . Bhi12g01927 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000623 6 7 1 9 5 3 4 3 3 2 3 3 3 4 2 3 3 4 3 3 2 2 3 2 2 3 4 5 2 1 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00216 Bda_Chr13 FPKM 0.096847 0.169 0.0 0.0 0.0 0.0 0.0 0.0 0.0