Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00219 ATGAGTTCAAATGTAACAGTGCTTGGAGTTCCTCTTCCTTCAAACCTTGCATTCAACGATGCTAGCCCAGAATGGATGAACAAAGCCGACAATGCTTGGCAGCTCACTGCGGCCACACTTGTGGGGCTGCAAAGCGTACCGGGGCTCATAATTCTGTACGGTGCGGCGGTGAAGAAGAAATGGGCTATAAACTCAGCATTCATGGCGCTCTACGCCTTTGCATGTGTCCTTATTTGTTGGGTGCTGTGGGGTTATAGATTGTCATTTGGCGACAGACTTGTTCCATTTTGGGGGAAAATTAACTTTGCTGTTGACCAGAAGTTCCTACTCCAGCAAGGATTTTCGGGAATGTTCCCTAATGCTACAATGATGTATTTTCAGTTTGTTTTTGCAGCGATTACTCTTATTTTGATCGCCGGCGCAGTGTTGGGCCGGATGAACTTCTATGCGTGGATGCTGTTTGTGCCTTTGTGGCTTACTTTTTCTTATACAATTGGAGCATTTTCCATCTGGAGTCCGAAAGGCTTCCTCACCAAACTAGGACTGATTGATTATTCTGGTGGTTATGTCATTCATTTATCTTCAGGCGTGGCTGGTTTCACTGCTGCATATTGGGTTGGTCCTCGTAATTCAAAGGACAGGGAAAACTTCCCTCCGAACAATGTCCTTCTCATGCTAGCCGGAGCAGGATTGCTCTGGATGGGATGGACGGGGTTCAACGGAGGAGACCCTTATGTGGTCAGCGTTGATGCTTCATTGGCTGTTTTGAACACTCATGTCTGCACTGCGGCAAGTCTGCTCACTTGGCTTGTTCTTGATGTCATCTTTTTTGGAAAACCTTCTATTATTGGCGCTGTTCAAGGCATGATCACCGGTTTGGTCTGCATTACACCCGCAGCGGGCATAGTGCAGGGTTGGGCAGCAATCCTAATGGGGATATTATCAGGTTCCATTCCTTGGTTTACAATGATGGTTGTCCACAAGAAATCTAAGCTCCTTCAAAAGGTGGATGACACAATGGCTGTCTTTCACACCCATGCCATCGCTGGAAGCCTCGGAGGAATCCTTTCCGGGCTCTTCGCCGAGCCGAGGCTATGTTACTTGTTTTACAATGCTTACAACAATTATATCGGCCTATTTTACGGCTTTCAAATGGGAAGAGTCCATGACGGGTTTCGACAAATTGGAATTCAACTCCTCGGAATCTTATTTGTCGTCGGCCTCAACGTGTTGACCACTAGTTTAATCTGTCTGCTGGTGCAGTTAATTGTTCCTCTGAGGATGTCGGATGAAGACATGGCGGTGGGAGATGAAGCAGCTCACGGAGAAGAAGCTTATGCCATATGGGGAGATGGGGAAAAGCTTGAAACGTTCAAGAACAGTGGAATGGGCTATGTTGATGTTGAAGCTCCCAACCATTCCAAATATAAAGGTGGCGGCCAAATTGAGATGGGTAGGGCCTGA 1464 46.99 MSSNVTVLGVPLPSNLAFNDASPEWMNKADNAWQLTAATLVGLQSVPGLIILYGAAVKKKWAINSAFMALYAFACVLICWVLWGYRLSFGDRLVPFWGKINFAVDQKFLLQQGFSGMFPNATMMYFQFVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTIGAFSIWSPKGFLTKLGLIDYSGGYVIHLSSGVAGFTAAYWVGPRNSKDRENFPPNNVLLMLAGAGLLWMGWTGFNGGDPYVVSVDASLAVLNTHVCTAASLLTWLVLDVIFFGKPSIIGAVQGMITGLVCITPAAGIVQGWAAILMGILSGSIPWFTMMVVHKKSKLLQKVDDTMAVFHTHAIAGSLGGILSGLFAEPRLCYLFYNAYNNYIGLFYGFQMGRVHDGFRQIGIQLLGILFVVGLNVLTTSLICLLVQLIVPLRMSDEDMAVGDEAAHGEEAYAIWGDGEKLETFKNSGMGYVDVEAPNHSKYKGGGQIEMGRA 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2791677 2793598 + Bda001096.1 Bda13g00219 18350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00219 487 ProSitePatterns Ammonium transporters signature. 184 209 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bda13g00219 487 PANTHER AMMONIUM TRANSPORTER MEP2 10 484 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda13g00219 487 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005887
Bda13g00219 487 PRINTS Rhesus blood group protein signature 254 276 IPR002229 GO:0005887
Bda13g00219 487 PRINTS Rhesus blood group protein signature 223 241 IPR002229 GO:0005887
Bda13g00219 487 Gene3D Ammonium transporter AmtB like domains 13 449 IPR029020 -
Bda13g00219 487 TIGRFAM amt: ammonium transporter 30 446 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda13g00219 487 Pfam Ammonium Transporter Family 32 446 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bda13g00219 487 PANTHER AMMONIUM TRANSPORTER 10 484 - -
Bda13g00219 487 SUPERFAMILY Ammonium transporter 25 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00200 Bda-Chr10:6968556 Bda13g00219 Bda-Chr13:2791677 0 dispersed
Bda13g00219 Bda-Chr13:2791677 Bda13g01007 Bda-Chr13:11811952 2.61E-48 dispersed
Bda04g01070 Bda-Chr4:61698657 Bda13g00219 Bda-Chr13:2791677 1.12E-63 transposed
Bda11g00498 Bda-Chr11:5304751 Bda13g00219 Bda-Chr13:2791677 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00219 K03320 - dcr:108199103 777.319