Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda13g00224 | ATGGAGAAGAAAGAAGAGGCTAAACCCGAGAATTCCACCATGGCAAATTCTTCCGTCATATTCTCCGACGAGATTTCGACCACTTTTGCTCTATCCGGCATCTTCGACATACCATGTGAGACAGAAAATCGTTCCTTGGGCTTCGTCGATTTGTTGGGTATCCAAGATTACAGTCCATCCTTATTCGATGTCTTTTCGATGCCGCTGTTGGCACCGGAAGCTCTGCCTTCTCCGGCATCCACCGTCCCAGAGTCATCGGAGGTGTTGAATACTCCCGCGACGCCTAACTCTTCTTCAATTTCTTCTTCCTCTAACGAAGCAGCTAACAATGAACAGACCAAAGCTGGTGAAGAGGACGAGCAAGATCAAGATAAGACTAAGAAACATTTGAAAACAAAAAAGAAAAACCAAAAAAGGCAAAGAGAGCCAAGATTTGCGTTTATGACGAAGAGCGAGGTCGATCATTTAGACGACGGCTACAGATGGCGCAAATACGGCCAAAAAGCTGTAAAAAACAGTCCATATCCAAGGAGCTATTATCGATGCACCACAGCCGGGTGTGGAGTGAAGAAGCGGGTAGAGCGATCCTGCGACGACCCATCGATCGTCGTCACAACCTACGAAGGCCAACACACTCATCAGACACCAGTAACGCCGCGGGGAAGCATCGGAATCTCGCCGGAAATGGGAGGATTCAACTCGCCATTTGCTGCTCAAATCAGCCAGCAAAACCGTCAACCCTACATGTACAATCCATTACCTTCTTTGAACATTAGCTCTGCTACTTTTAACCCTTCGTTTCCCACCTTTTCTCAAAACAAACTTGCTGGGTCGCCCTCTCCTTCTTTACTTAGAGACCACGGGCTTCTTCAGGATATCGTACCATTTCAGATGCGGAAAGACCCAAAAGAGGAATAA | 918 | 47.17 | MEKKEEAKPENSTMANSSVIFSDEISTTFALSGIFDIPCETENRSLGFVDLLGIQDYSPSLFDVFSMPLLAPEALPSPASTVPESSEVLNTPATPNSSSISSSSNEAANNEQTKAGEEDEQDQDKTKKHLKTKKKNQKRQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSCDDPSIVVTTYEGQHTHQTPVTPRGSIGISPEMGGFNSPFAAQISQQNRQPYMYNPLPSLNISSATFNPSFPTFSQNKLAGSPSPSLLRDHGLLQDIVPFQMRKDPKEE | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 2849666 | 2850812 | + | Bda001102.1 | Bda13g00224 | 18355 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda13g00224 | 305 | MobiDBLite | consensus disorder prediction | 76 | 145 | - | - | |
| Bda13g00224 | 305 | PIRSF | WRKY_txn_fact_IIc | 1 | 303 | IPR017396 | GO:0003700 | |
| Bda13g00224 | 305 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 1 | 294 | IPR044810 | GO:0003700 | |
| Bda13g00224 | 305 | SMART | WRKY_cls | 156 | 215 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Bda13g00224 | 305 | MobiDBLite | consensus disorder prediction | 112 | 127 | - | - | |
| Bda13g00224 | 305 | MobiDBLite | consensus disorder prediction | 79 | 111 | - | - | |
| Bda13g00224 | 305 | Pfam | WRKY DNA -binding domain | 157 | 214 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Bda13g00224 | 305 | ProSiteProfiles | WRKY domain profile. | 151 | 216 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Bda13g00224 | 305 | Gene3D | WRKY domain | 140 | 217 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Bda13g00224 | 305 | PANTHER | WRKY TRANSCRIPTION FACTOR | 1 | 294 | - | - | |
| Bda13g00224 | 305 | SUPERFAMILY | WRKY DNA-binding domain | 148 | 216 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda03g01188 | Bda13g00224 | CCT | |
| Bda03g01188 | Bda13g00224 | ECH | |
| Bda11g00494 | Bda13g00224 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00405 | Bda-Chr5:49364112 | Bda13g00224 | Bda-Chr13:2849666 | 7.75E-67 | dispersed | |
| Bda10g00668 | Bda-Chr10:40786411 | Bda13g00224 | Bda-Chr13:2849666 | 4.03E-60 | dispersed | |
| Bda11g01183 | Bda-Chr11:12207069 | Bda13g00224 | Bda-Chr13:2849666 | 2.47E-44 | dispersed | |
| Bda11g01309 | Bda-Chr11:14181980 | Bda13g00224 | Bda-Chr13:2849666 | 2.10E-44 | dispersed | |
| Bda02g00076 | Bda-Chr2:2990854 | Bda13g00224 | Bda-Chr13:2849666 | 1.62E-43 | transposed | |
| Bda03g01188 | Bda-Chr3:14265918 | Bda13g00224 | Bda-Chr13:2849666 | 5.17E-58 | transposed | |
| Bda11g01345 | Bda-Chr11:15001434 | Bda13g00224 | Bda-Chr13:2849666 | 1.48E-32 | transposed | |
| Bda11g01358 | Bda-Chr11:15805064 | Bda13g00224 | Bda-Chr13:2849666 | 3.53E-32 | transposed | |
| Bda13g01591 | Bda-Chr13:39487876 | Bda13g00224 | Bda-Chr13:2849666 | 8.33E-32 | transposed | |
| Bda14g01185 | Bda-Chr14:11728735 | Bda13g00224 | Bda-Chr13:2849666 | 9.92E-34 | transposed | |
| Bda15g00853 | Bda-Chr15:13353748 | Bda13g00224 | Bda-Chr13:2849666 | 2.51E-52 | transposed | |
| Bda11g00494 | Bda-Chr11:5270703 | Bda13g00224 | Bda-Chr13:2849666 | 7.16E-166 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16855 | PF03106 | WRKY | 3.00E-26 | CL0274 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda13g00224 | - | - | jre:109010772 | 380.948 |