Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00226 ATGATCGTTATCCTTCTTCCTTATTTACGTCGAAACTCGAAAATAATCATTCATTTTCAGAGAGAGGAACAAATGGCGAAACACGAAGAGCTTCCCATCCCCGTCTTCTCAACCTTGGAGCCTGTCTACGGCGGCGGCTCTCAGCTCGAAGAAGCTCAGCTTCGATTCGATTTTTTGAAATCCAAGTTTCTTCAAGTATTTGGTAGAGTGAACTTGATCGGAGAGCACATTGATTACGAGGGATACTCGGTGTTGCCCATGGCAATTCGGCAAGATACTATTGTCGCTATAAGGAAGAGTTATGGTGGTGAAAAGCTTCTCAGAATTGCTAATGTGAATGATAAATATTCCATTTGCTCTTATCCTGCCGATCATGATCAGGAAATTGATTTGAAGAATCACAAATGGGGGCATTACTTTATTTGTGGGTACAAAGGCTATAATGAATATGCTAGATCAAAAGGAATTGATGTTGGTTTACCAGTCGGGCTAGATATTCTTGTCGATGGAACGGTTCCTACAGGTTCTGGGCTATCAAGCTCTGCAGCATTTGTTTGCTCTTCCACCATTGCTATTATGGCTGCCTTTGATGTGAATTTCCCAAAGAAAGAAGTTGCCCAGCTTACATGTGAATGTGAAAGACACATTGGTACACAATCTGGTGGAATGGATCAGGCAATATCCGTTATGGCCAAATCAGGATTTGCGGAGTTGATTGATTTCAATCCTATCCGAGCCACTGATGTGAAACTTCCTGCTGGGGGAACTTTTATTATAGCTCATTCTCTGGCGGAATCTCAGAAAGCTGTCACCGCTGCTACAAATTACAATAATAGAGTTGTTGAATGTCGGCTGGCTGCAATTGTACTTGGGATAAAGCTTGGAATGAAACCACAAGAAGCAATATCAAAAGTGAAAACACTGTCTGATGTTGAAGGGCTGTGTCTATCATTTGCTTCTAGTCGTGGCTCTTCAGATCCCGTTCTTGCTGTACAGGCACTATTGAAGGAGGAACCTTATACTGCAACAGAGATTGAGGAAATCACAGAAGAAAATCTACCATCAGTGTTGGGCAACTCTCCTACTTCATTGGAAGTGTTGAAAGCTGCAAAGCACTTCAAGTTGCATCAGAGAGCCTCTCATGTCTATTCTGAAGCCAGAAGAGTTTATGCTTTTAAGGACACCGTATCATCAAATTTAGATGAGGAGGACTTATTAAAGAAGCTTGGTGATCTTATGAATGACAGCCATTACAGCTGCAGTGTCCTTTATGAGTGCAGCTGCCCAGAGTTGGAAGAACTAGTAAATATATGTCGCGACAATGGTGCTTTTGGGGCGAGGCTAACCGGAGCCGGATGGGGGGGTTGTGCAGTTGCATTGGTGAAAGAGAGCATAGTCCCCCAATTTATCCTTAATTTAAAGGAAAGCTACTACCAATCAAGAATTGATAAAGGGATCATCGGCAAGAATGATCTTGGTCTCTATATCTTTGCTTCCAAGCCATCAAGTGGTGCTGCAATATTCAAGTTTTAA 1533 42.34 MIVILLPYLRRNSKIIIHFQREEQMAKHEELPIPVFSTLEPVYGGGSQLEEAQLRFDFLKSKFLQVFGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKSYGGEKLLRIANVNDKYSICSYPADHDQEIDLKNHKWGHYFICGYKGYNEYARSKGIDVGLPVGLDILVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKEVAQLTCECERHIGTQSGGMDQAISVMAKSGFAELIDFNPIRATDVKLPAGGTFIIAHSLAESQKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCLSFASSRGSSDPVLAVQALLKEEPYTATEIEEITEENLPSVLGNSPTSLEVLKAAKHFKLHQRASHVYSEARRVYAFKDTVSSNLDEEDLLKKLGDLMNDSHYSCSVLYECSCPELEELVNICRDNGAFGARLTGAGWGGCAVALVKESIVPQFILNLKESYYQSRIDKGIIGKNDLGLYIFASKPSSGAAIFKF 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2855596 2859381 + Bda001104.1 Bda13g00226 18357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00226 510 Gene3D - 62 249 IPR014721 -
Bda13g00226 510 Gene3D - 275 425 - -
Bda13g00226 510 PIRSF Galactokinase 50 509 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Bda13g00226 510 SUPERFAMILY Ribosomal protein S5 domain 2-like 60 253 IPR020568 -
Bda13g00226 510 TIGRFAM gal_kin: galactokinase 62 479 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bda13g00226 510 PRINTS Mevalonate kinase family signature 212 231 - -
Bda13g00226 510 PRINTS Mevalonate kinase family signature 445 462 - -
Bda13g00226 510 PRINTS Mevalonate kinase family signature 66 90 - -
Bda13g00226 510 PRINTS Mevalonate kinase family signature 170 192 - -
Bda13g00226 510 ProSitePatterns GHMP kinases putative ATP-binding domain. 172 183 IPR006203 GO:0005524
Bda13g00226 510 Gene3D - 250 479 - -
Bda13g00226 510 PRINTS Galactokinase signature 163 181 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bda13g00226 510 PRINTS Galactokinase signature 377 391 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bda13g00226 510 PRINTS Galactokinase signature 68 86 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bda13g00226 510 Pfam GHMP kinases N terminal domain 165 230 IPR006204 GO:0005524
Bda13g00226 510 Pfam GHMP kinases C terminal 406 478 IPR013750 -
Bda13g00226 510 Pfam Galactokinase galactose-binding signature 68 99 IPR019539 -
Bda13g00226 510 ProSitePatterns Galactokinase signature. 68 79 IPR019741 -
Bda13g00226 510 SUPERFAMILY GHMP Kinase, C-terminal domain 256 484 IPR036554 -
Bda13g00226 510 PANTHER MEVALONATE KINASE/GALACTOKINASE 25 509 - -
Bda13g00226 510 PANTHER BNAA01G32760D PROTEIN 25 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00226 K18674 GALK2; N-acetylgalactosamine kinase [EC:2.7.1.157] - zju:107407595 838.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00244 Bda-Chr2:39510696 Bda13g00226 Bda-Chr13:2855596 3.06E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g44 . . . . . Bpe14g01089 . . . . Cma06g01572 Cma14g01579 Car06g01336 Car14g01390 Sed02g1128 Cpe08g00143 Cpe03g01318 Bhi01g01101 Tan10g1088 Cmetu06g1064 . Hepe05g1365 . Lcy11g1328 . . . . . . . . Cone15ag0720 . . Lsi05g01410 . . Cme06g00801 Blo02g00471 Blo07g00132 . Bda13g00226 . . Bma02g00937 . . Cmo06g01566 Cmo14g01611 . . . . . . . . . . . . . Cla05g00717 Cam05g0784 Cec05g0790 Cco05g0786 Clacu05g0774 Cmu05g0739 Cre05g0813 . Csa03g01530 Chy06g00767 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005121 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00226 Bda_Chr13 FPKM 2.648464 1.876043 5.44568 4.275803 6.499893 5.46449 5.745505 18.426863 18.761599