Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00227 ATGGCCGTACGTAACGATTCGAATGCAATTGGAAAAAAATCGAGTGAAACTGCCAACGACATACCTATCTTCAATGCGGAGAATTTGCAAAGCAACATGAAGATTATATATTACAGCCGAACTTTTATGTCGATAATTGGTGGTGTGATTGCCGGAATATTGGGATTTACAAGCTTGACCGGATTTGTCTTTTATTTTTTAGTCATGGCTATTACTTCAGTTGGCCTTATAGCCAAGGCAAAAGTTTCCGTTCATTCATATTTTGATTCCTGGAATCAAATTGTATTTGATGGGTTCCTGGGTGGTCTCATGTCGTTCGTGCTGTTCTGGACATTTGCTTACGACATTGTCCACATATTTTGA 363 38.84 MAVRNDSNAIGKKSSETANDIPIFNAENLQSNMKIIYYSRTFMSIIGGVIAGILGFTSLTGFVFYFLVMAITSVGLIAKAKVSVHSYFDSWNQIVFDGFLGGLMSFVLFWTFAYDIVHIF 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2860372 2862257 - Bda001105.1 Bda13g00227 18358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00227 120 Pfam EMC6 36 114 IPR029008 -
Bda13g00227 120 PANTHER UNCHARACTERIZED 11 120 IPR008504 GO:0005783|GO:0016021|GO:0072546
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00227 K23567 EMC6, TMEM93; ER membrane protein complex subunit 6 - zju:107404793 210.305
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00323 Bda13g00227 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00450 Bda-Chr4:52631497 Bda13g00227 Bda-Chr13:2860372 3.61E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g37 Blo01g00040 . . Bda08g00323 . Bpe14g01088 . . . Cmo17g00372 Cma06g01574 . Car06g01337 . . Cpe08g00142 . . . . . . . . Cla06g00414 Cam06g0436 Cec06g0442 Cco06g0441 Clacu06g0423 Cmu06g0422 Cre06g1201 . Cone15ag0717 . . . . Chy11g01586 . Blo02g00470 . . Bda13g00227 . . Bma02g00938 . . Cmo06g01568 . . Cma17g00383 . Car17g00354 Cpe12g00334 . Bhi12g01951 . . Lac11g0985 Hepe03g0033 . . . . . . . . . Lsi09g01508 . . Cme11g02095
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008565 2 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00227 Bda_Chr13 FPKM 48.262897 49.853184 47.121143 50.646206 44.94265 40.63842 49.912167 72.847046 67.830765