Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00229 GTAATCATGGGTTTTTCAAACGTTGCTTTTCTGTCTGTTTTCTTGATGGCCTTCACTGGCCTCAGTTCAGCCGTCGTCTACGACGTCGGTGACGCCGCTGGCTGGACCAAAATGGGCTCCGTCAATTACACTTCCTGGGCCGCTTCTAAGAAGTTCTTCGTCGGAGACACCATAGTTTTCAAGTACGAGAAAGGCGAAGAGTTGCTGCGGGTGAAGCACGGTGATTTTAAGAAATGCGACACGAGGAATCCCCAAGCTAGCTTCACCTCCGGGAAAGACTCTTTTCCGCTGAAGAAGCCGACCCATATTTACTACATCAGCGCCGTCTACGGTGACTGCATGGCAGGACAAAAGGTCGACATTAAGGTCGTCTCCGACTCGCATTCTACGCCCACTCCATCTCCTTCTCCCGCCGTTCCAGACTCTCCGTCTTTTTCGCCGGCGCCTAGTCCTAGCGCTTCTCCTTCCCTTCATGCTGCCGGTGGACTGATTTCCATCTGCATTTTGGCCATGATCCTCCTTTTTGTCTAA 531 51.98 VIMGFSNVAFLSVFLMAFTGLSSAVVYDVGDAAGWTKMGSVNYTSWAASKKFFVGDTIVFKYEKGEELLRVKHGDFKKCDTRNPQASFTSGKDSFPLKKPTHIYYISAVYGDCMAGQKVDIKVVSDSHSTPTPSPSPAVPDSPSFSPAPSPSASPSLHAAGGLISICILAMILLFV 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2885944 2886577 + Bda001108.1 Bda13g00229 18360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00229 176 SUPERFAMILY Cupredoxins 24 124 IPR008972 -
Bda13g00229 176 PANTHER BLUE COPPER PROTEIN 8 139 IPR039391 GO:0009055
Bda13g00229 176 ProSiteProfiles Phytocyanin domain profile. 25 125 IPR003245 GO:0009055
Bda13g00229 176 CDD Phytocyanin 25 123 - -
Bda13g00229 176 Gene3D - 23 129 IPR008972 -
Bda13g00229 176 MobiDBLite consensus disorder prediction 133 150 - -
Bda13g00229 176 Pfam Plastocyanin-like domain 35 117 IPR003245 GO:0009055
Bda13g00229 176 MobiDBLite consensus disorder prediction 125 151 - -
Bda13g00229 176 PANTHER BNAA09G04270D PROTEIN 8 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00229 - - - nnu:104596498 122.094
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00326 Bda13g00229 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00570 Bda-Chr11:5892431 Bda13g00229 Bda-Chr13:2885944 7.91E-28 dispersed
Bda13g00229 Bda-Chr13:2885944 Bda06g00300 Bda-Chr6:4977900 6.10E-26 dispersed
Bda13g00229 Bda-Chr13:2885944 Bda13g01385 Bda-Chr13:36518799 2.16E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g4 Blo01g00046 . . Bda08g00326 . . . Bma05g01013 . . . . Car06g01340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00229 . Bpe13g00710 Bma02g00941 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016221 1 0 1 2 3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 8