Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00231 ATGGCGCGTCAGAATCTTCTGCATCCAAATTTGTCCCAGTTATTCGTTCTGGTTGTTACACGGACATTGGACCTAGGGAATCCATGGAAGATGAACACATTCAGATTGATGATTTGTCTGTTCATCTTGGTAACTCTCTTCAACTGTCCTTTGCAGGGTGCTTTCTATGCAGTATTTGACGGCCATGGAGGACCCGATGCAGCTGCATTCATCAAGAAGAATGCTCTGAGATTATTTTTTGAAGACGCCGATTTACTCCAAACATCCGACATTGATTCGCTATTCATAAAAGAGTTAGAGAATTCTCATAGGAAAGCATTTTTAGTTGCAGACCTTGCAATGGCTAACGAATGCAGTGTCAGCAGCTCATGTGGAACTACAGCCCTGACAGCCTTTCTTCTCGGAAGACATTTGTTGGTTGCAAATGCCGGAGACTGTCGGGCTGTTCTCTGCAGAAAAGGGATTGCAGTGGAGATGTCAAAGGACCATAGACCGACTAATGCAGTCGAATGCAAGAGAGTTGAGCAGCTAGGCGGCTACATCAATGATGGATATCTTAATGGCTATCTGTCAGTAACCCGAGCTTTGGGCGACTGGGACTTCAAATTCCCCCTCGGCTCCTCCTCACCTCTCATTGCCGAACCAGAGTTTGAACACGTTAAGCTAACAGAAGAGGACGAATTCTTGATCATTGGTTGCGATGGTGTATGGGACGTAATGTCAAGTCAGTATGCAGTTAGTCTCGTCCGACGGGGATTAAGAAGGCATAACGACCCTCGGCAAAGCGCTAAAGAAGTAGTTGCTGAAGCTCTCCGGCTCAGCACATCTGATAATCTTACAGTGATTGTGATTAGTTTTTGTCCTCCCAGCCGAATAATCGAGTCAAGCCCCGGTCGACCACAGAGGCTCAGGTTCTGTAATACATCGCAAAGAGCCCACAAGTAA 945 46.35 MARQNLLHPNLSQLFVLVVTRTLDLGNPWKMNTFRLMICLFILVTLFNCPLQGAFYAVFDGHGGPDAAAFIKKNALRLFFEDADLLQTSDIDSLFIKELENSHRKAFLVADLAMANECSVSSSCGTTALTAFLLGRHLLVANAGDCRAVLCRKGIAVEMSKDHRPTNAVECKRVEQLGGYINDGYLNGYLSVTRALGDWDFKFPLGSSSPLIAEPEFEHVKLTEEDEFLIIGCDGVWDVMSSQYAVSLVRRGLRRHNDPRQSAKEVVAEALRLSTSDNLTVIVISFCPPSRIIESSPGRPQRLRFCNTSQRAHK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2890588 2891532 - Bda001110.1 Bda13g00231 18362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00231 314 Pfam Protein phosphatase 2C 49 278 IPR001932 -
Bda13g00231 314 ProSiteProfiles PPM-type phosphatase domain profile. 18 286 IPR001932 -
Bda13g00231 314 SMART PP2C_4 20 284 IPR001932 -
Bda13g00231 314 SUPERFAMILY PP2C-like 48 286 IPR036457 -
Bda13g00231 314 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 46 307 - -
Bda13g00231 314 ProSitePatterns PPM-type phosphatase domain signature. 55 63 IPR000222 GO:0043169
Bda13g00231 314 Gene3D - 39 288 IPR036457 -
Bda13g00231 314 CDD PP2Cc 41 286 IPR001932 -
Bda13g00231 314 PANTHER PROTEIN PHOSPHATASE 2C 46 307 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00413 Bda-Chr5:49739424 Bda13g00231 Bda-Chr13:2890588 7.40E-105 dispersed
Bda13g00231 Bda-Chr13:2890588 Bda13g01275 Bda-Chr13:35110645 1.14E-67 dispersed
Bda12g00106 Bda-Chr12:854926 Bda13g00231 Bda-Chr13:2890588 8.02E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00231 K14803 - mnt:21408816 399.438