Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00235 ATGGCTGAGCCTACATCTGCCGCCCTAGGTCCGCGCTATGCACCTGATGATCCTACTCTTCCTAGGCCTTGGAAGGGTTTAATTGATGGAAGCACAGGTCTGTCATACTATTGGAACCCTGAAACAAACGTCACCCAGTATGAAAAGCCAGTAGCCACAACACCCCCTATGCCACTTGCTCCAATTCCAGGGGGACATTCAGTGCTGTCTAATGGTGTTACGGCTCAGATTGGGCAGCAAATCTCACAAGGCTCTCAACACGAAGGTCAGCAAATGAGTCATTTATCTCAGCATCCATACCCAGTGGCACAGCAACAGAGTTCTATGGCGGTGCAGGTGTCACACCAGGAAGGGTTGCAAATCACCCAAGCATTACAACATCATGGCCTGCATTCAAGTCAGGCCATGCACCAGCTGGGGCAATTACAGCAACATAAGCAACACATGATGCAGTATCAGGGCCAACAAACGTTACAGAATACAAATCAGCATATGTCTCAGCCACCAAATCTGCAAGCTCTACAACATCCTGGGCAAATAATTTCACAACAATCAGCCCCTCAAATGCCCCACAAGATTTCCCCTAGTCAAGGTTTACCAATGGGACAACATCAAGGGCAGTATGTACATCAACAATTTCAATACATGGCCTATCAGCCCAATGCGGTGCCCAAAATTCCGCAAAATTCACAGCAGCAGGTCCATCATAATGTCCAAGGGCAGCCGTTTGCAAATCAACAAGAGTATATGACTACGAACTCAAAGAAGGAGGAAGATGATTTTCAGCATGGAAACCAAGTGGTATTTTCGCCTTCCCAGTTCCAGCAAACTAGCATCTCATCCGCTAACAACGTTCATGCTGGAACGAATTCAATTCCCATGCAAAAGTTTGGTGCTCCATCAGGTCAAGCCCCAAAATTTGGTGTTCCACCAGCTGGCGTGCAGCAGACACCTCCAATGGCTCAGTTACAGGCAACTGATTTGGATTTTAGGCCCCTACATCTTCCAAAGTTTCAGAATCAGATGAATCCTGCTTTAATGCACAGCCAGCAGGCTGGTGTACCTCCTAATGACATGAAAATGGAAAACGAAGAAAATATGTCGGGAAGAGTTGGAAATGAATATTATGCCAGCGGTAACAAGGATGTGCCTACTGTTTCTATGCAGCAACCAAAGCTTGCAACCATACCAATGGGAAGGAGTCATCCGGAGATGAGAATGAGTGGAGTTCCATTTCAAAATACGATACCTGGTCAATCCAGTGGTCTGAATGCTGTAGCTGGATATTCCTTGCAGAATGTTTACAGTCAGGGTATGGGTGGTCAACCATTACCGAATAACTCTCAAATGAGGCTTCCTATTGGATCTTCAGATGTTACAATTATGTCGCCTGTTGAAAATTACTGCAAACAACATGAAGTTACTACAACGGGTGATAATGTTCCAGCACCATTTATAACATTTGAAGCAACTGGTTTCCCTCCAGAAATATTGAAAGAGATCTATTCTGCTGGTTTCTCCTCTCCAACACCGATTCAAGCACAAACATGGCCAATTGCTCTACAAGGTCGAGATATTTTAGCAATTGCTAAAACAGGATCAGGGAAAACATTGGGCTATTTGATTCCTGCCTTTATTCTTCTAAGGCAACGCCATAATAATCCTCAAAATGGACCAACAGTGCTAGTACTGTCTCCTACTCGGGAGCTTGCCACACAAATACAAGATGAGGCCATCAAGTTTGGTCGATCTTCAAGGGTCTCTTGCACCTGCTTGTATGGTGGAGCTCCAAAGGGTCCTCAGCTAAAAGAATTAGACAGAGGTGCAGATATTGTGGTGGCAACTCCTGGTAGGCTCAATGACATTCTTGAAATGAAAATGATAAATTTTAGACAAATTTCTCTGCTTGTGCTTGACGAAGCCGATCGCATGCTTGACATGGGGTTTGAACCTCAAATTCGTAAAATTGTGAATGAGATACCCCCTCGTAGGCAAACTCTTATGTATACAGCAACCTGGCCAAAAGAAGTTAGGAAAATAGCGGGTGATCTTCTCGTCAATCCTGTCCAGGTTAATATTGGCAGTGTCGATGAGCTTGCTGCAAACAAGGCTATCACACAGTTTGTTGAAGTGGTTCCACAGATGGAAAAGCAGAATCGCTTGGAGCAGATCCTACGATCTCAGGAACGAGGCTCCAAGGTTATTATTTTCTGTTCCACGAAAAGATTGTGTGATCATCTTGCACGAAGCCTTGGACGCTCATTTGGAGCTGCTGCTATTCATGGAGACAAGTCTCAGGGGGAGAGAGACTGGGTATTAAATCAGTTCCGCAATGGAAAGTCTCCCATACTAGTTGCTACTGACGTAGCTGCCCGTGGTCTTGATATCAAGGATATCAGAGTAGTGATCAACTATGACTTTCCCACTGGAATTGAGGACTATGTTCACCGAATTGGAAGAACTGGACGAGCTGGTGCTACAGGAATGTCTTATACCTTTTTCTCTGACCAGGACTGGAAATATGCCGCCGACTTAATTAAAGTACTTGAAGGGGCTAACCAACAAGTGCCCCCAGAGGTAAGAGAAATGGCTATGCGTGGTGGACCCAGTTTTGGGAAAGATCGTGGAGGTATTAACCGTTTTGATCCTAGTAGTGGTAGTGGCCGTTGGGATTCTACTGGGCGTGGCAGAGTGAGAGATGGCGGTTTTGGTGGCCGTGGTGGCATGAGGGATGGCGGTTTTAGTGGCCGTGGTGGCATGAGGGATGGCTTTGGCGATCGTGGCGGGAGAAATGATTTCTTTCCTGGTCGTGGTAACAGGGGACGTGGTTTTGGCGGTCCTATGGGAGGAGGCCATGTCGGTTGGAGCAGGAATGACAATGGTGGCCCAAGCAACTGGTATAACACTATCGATGGGCGAGGCCGAGGCCGTGGGCAAGGTCGATTTGACAACAGAAGAGACATTTCTGATAGGAGCAGGGGCAGAAGTTACAGTCGTAGTCCTGAAAGAGTTCGAACATGGGGTTACAGTAGAAGCCGTAGTAGTAGCCGTAGTAGTCGCAGCCGGAGCTGGAGTAGGAGCCGCAGCCGTAGCGGGAGTCGGAGTCGGAGTCGGAGTAGGAGTCGGAGCCGCAGCCGCAGCCGCAGCCGCAGCCGCAACCATAACCGCAGCCGCAGCCGCACCTGGTCTAGAGGTCATAATCGTAGCCGCAGCCGAAGCCGAAGCCTCGAGAGGCCTCGCGCTCAAAACATTGATAAAGAGAATAGTAAATCTCCAAAACTTGGAACCACATCTGAATCTGCTATGTTTACCAAGCCTCCTGTCAAGGACGGTAACACAGTCTTAGAAACCAGTGATGTGGGTCAGCTGCCTGTGATTGAAAGCGCTGCTCGTGGCTATCCAGAGACTGCAGTAGACGGTGCTGAAACAGTTATCAATTCTTGA 3444 47.47 MAEPTSAALGPRYAPDDPTLPRPWKGLIDGSTGLSYYWNPETNVTQYEKPVATTPPMPLAPIPGGHSVLSNGVTAQIGQQISQGSQHEGQQMSHLSQHPYPVAQQQSSMAVQVSHQEGLQITQALQHHGLHSSQAMHQLGQLQQHKQHMMQYQGQQTLQNTNQHMSQPPNLQALQHPGQIISQQSAPQMPHKISPSQGLPMGQHQGQYVHQQFQYMAYQPNAVPKIPQNSQQQVHHNVQGQPFANQQEYMTTNSKKEEDDFQHGNQVVFSPSQFQQTSISSANNVHAGTNSIPMQKFGAPSGQAPKFGVPPAGVQQTPPMAQLQATDLDFRPLHLPKFQNQMNPALMHSQQAGVPPNDMKMENEENMSGRVGNEYYASGNKDVPTVSMQQPKLATIPMGRSHPEMRMSGVPFQNTIPGQSSGLNAVAGYSLQNVYSQGMGGQPLPNNSQMRLPIGSSDVTIMSPVENYCKQHEVTTTGDNVPAPFITFEATGFPPEILKEIYSAGFSSPTPIQAQTWPIALQGRDILAIAKTGSGKTLGYLIPAFILLRQRHNNPQNGPTVLVLSPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQFVEVVPQMEKQNRLEQILRSQERGSKVIIFCSTKRLCDHLARSLGRSFGAAAIHGDKSQGERDWVLNQFRNGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGMSYTFFSDQDWKYAADLIKVLEGANQQVPPEVREMAMRGGPSFGKDRGGINRFDPSSGSGRWDSTGRGRVRDGGFGGRGGMRDGGFSGRGGMRDGFGDRGGRNDFFPGRGNRGRGFGGPMGGGHVGWSRNDNGGPSNWYNTIDGRGRGRGQGRFDNRRDISDRSRGRSYSRSPERVRTWGYSRSRSSSRSSRSRSWSRSRSRSGSRSRSRSRSRSRSRSRSRSRNHNRSRSRTWSRGHNRSRSRSRSLERPRAQNIDKENSKSPKLGTTSESAMFTKPPVKDGNTVLETSDVGQLPVIESAARGYPETAVDGAETVINS 1147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2908759 2914315 - Bda001114.2 Bda13g00235 18366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00235 1147 Gene3D - 696 867 IPR027417 -
Bda13g00235 1147 SMART helicmild6 741 825 IPR001650 -
Bda13g00235 1147 Gene3D - 14 54 - -
Bda13g00235 1147 MobiDBLite consensus disorder prediction 1023 1069 - -
Bda13g00235 1147 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 637 645 IPR000629 -
Bda13g00235 1147 Gene3D - 460 695 IPR027417 -
Bda13g00235 1147 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 279 945 - -
Bda13g00235 1147 MobiDBLite consensus disorder prediction 1003 1022 - -
Bda13g00235 1147 MobiDBLite consensus disorder prediction 1088 1103 - -
Bda13g00235 1147 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Bda13g00235 1147 CDD WW 21 51 IPR001202 GO:0005515
Bda13g00235 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 517 691 IPR014001 -
Bda13g00235 1147 MobiDBLite consensus disorder prediction 1 21 - -
Bda13g00235 1147 CDD SF2_C_DEAD 705 834 - -
Bda13g00235 1147 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Bda13g00235 1147 Pfam DEAD/DEAH box helicase 510 680 IPR011545 GO:0003676|GO:0005524
Bda13g00235 1147 Pfam Helicase conserved C-terminal domain 717 825 IPR001650 -
Bda13g00235 1147 MobiDBLite consensus disorder prediction 183 203 - -
Bda13g00235 1147 SMART ww_5 19 52 IPR001202 GO:0005515
Bda13g00235 1147 SMART ultradead3 505 708 IPR014001 -
Bda13g00235 1147 MobiDBLite consensus disorder prediction 976 1000 - -
Bda13g00235 1147 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 486 514 IPR014014 GO:0003724
Bda13g00235 1147 MobiDBLite consensus disorder prediction 867 1115 - -
Bda13g00235 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 720 864 IPR001650 -
Bda13g00235 1147 MobiDBLite consensus disorder prediction 1070 1087 - -
Bda13g00235 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 842 IPR027417 -
Bda13g00235 1147 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 279 945 - -
Bda13g00235 1147 Pfam WW domain 20 50 IPR001202 GO:0005515
Bda13g00235 1147 SUPERFAMILY WW domain 11 52 IPR036020 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00235 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - zju:107433321 1179.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01283 Bda-Chr1:48216244 Bda13g00235 Bda-Chr13:2908759 1.77E-18 dispersed
Bda05g00401 Bda-Chr5:49255391 Bda13g00235 Bda-Chr13:2908759 5.02E-102 dispersed
Bda07g00069 Bda-Chr7:913485 Bda13g00235 Bda-Chr13:2908759 1.98E-109 dispersed
Bda07g00715 Bda-Chr7:8448612 Bda13g00235 Bda-Chr13:2908759 1.71E-101 dispersed
Bda09g00282 Bda-Chr9:3498910 Bda13g00235 Bda-Chr13:2908759 4.65E-103 dispersed
Bda12g00435 Bda-Chr12:5345520 Bda13g00235 Bda-Chr13:2908759 3.07E-09 dispersed
Bda13g00503 Bda-Chr13:5972182 Bda13g00235 Bda-Chr13:2908759 1.39E-83 dispersed
Bda13g01542 Bda-Chr13:38653409 Bda13g00235 Bda-Chr13:2908759 1.46E-64 dispersed
Bda13g00235 Bda-Chr13:2908759 Bda05g00585 Bda-Chr5:53837001 1.64E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45