Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00238 GTAGGCAACAATGGCGGATATTTCCCAAGAGCAACAGGTCCGAACAATTTACAGACTGTAAATATCCAACCTATTTTGATACCGGCCATTCCAGTTGAAGAATTGAGAGCGATGACCGATAATTTCAGCGACAAGTCTATGATTGGTGAGGGATCATATGGAAGCATATATTGTGGTGTTCTTAAAAGTGGGCAGACTGCGGCCATAAAAAAACTGGAGTCTAGCAGGCAACCAGAACAAGAATTTCTAGCTCAGGTGTCCATGGTGTCAAGACTAGAAAATGAAAACGTTGTAAAGCTTGTCGGCTATTGTAATGGTGGGCCAATCCGCGCCCTTGCTTATGAGTATGCTTCGCATGGGTCTCTTCATGATATTCTCCATGGTAAATTTAAGTTATTTTTCTATTTAAAAATGGATGTTTTTTATGAAATAGGAAAGAAAGGAGTCAAAGGAGCACAACCCGGCCCTGTACTGTTGTGGACTCGAAGAGTAAAAATTGCATTAGGAGCTGCAAAAGGACTAGAATACCTGCACGAGCGGGCACAACCTCAAATAATTCATCGTGATATTAAGTCGAGTAATATTCTTGTTTTTGACGACGACGAAGCTAAGATTGCTGATTTTGATCTGTCAAATCAAGCTCCGGATAATGCAGCCCGGCTTCATTCAACTCGTGTCCTCGGGACGTTCGGTTATCATGCTCCTGAATATGCAATGACTGGGCAACTGAGCACGAAAAGTGATGTTTACAGCTTCGGCGTCATTCTTCTTGAACTCTTGACCGGTCGTAAGCCTGTTGATCATACACTTCCTCGTGGTCAACAAGCGACGCCAAAACTCGTCGAAGATAAGGTTAAGCATTGTGTCGATGCTCGGCTCGTGGAGAATTACCCCCCCAAGTCTGTGGCCAAGTTTGCTTCTGTTGCTGCCCTGTGTGTGCAATATGAAGCCAATCTCCGGCCAAGTATGAACATTGTCGTGAAAGCACTCGAACCTTTATTGAACACTCGTCCTGCTCCTCAATCGAGACGTCCAAACGATATTGTCTCTGCCTAA 1056 44.22 VGNNGGYFPRATGPNNLQTVNIQPILIPAIPVEELRAMTDNFSDKSMIGEGSYGSIYCGVLKSGQTAAIKKLESSRQPEQEFLAQVSMVSRLENENVVKLVGYCNGGPIRALAYEYASHGSLHDILHGKFKLFFYLKMDVFYEIGKKGVKGAQPGPVLLWTRRVKIALGAAKGLEYLHERAQPQIIHRDIKSSNILVFDDDEAKIADFDLSNQAPDNAARLHSTRVLGTFGYHAPEYAMTGQLSTKSDVYSFGVILLELLTGRKPVDHTLPRGQQATPKLVEDKVKHCVDARLVENYPPKSVAKFASVAALCVQYEANLRPSMNIVVKALEPLLNTRPAPQSRRPNDIVSA 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2968627 2970560 + Bda001118.3 Bda13g00238 18369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00238 351 SMART serkin_6 42 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00238 351 Pfam Protein tyrosine and serine/threonine kinase 46 330 IPR001245 GO:0004672|GO:0006468
Bda13g00238 351 ProSiteProfiles Protein kinase domain profile. 42 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00238 351 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Bda13g00238 351 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
Bda13g00238 351 PIRSF ILK 151 343 - -
Bda13g00238 351 PIRSF ILK 16 136 - -
Bda13g00238 351 Gene3D Transferase(Phosphotransferase) domain 1 117 348 - -
Bda13g00238 351 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 340 - -
Bda13g00238 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Bda13g00238 351 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 340 - -
Bda13g00238 351 Gene3D Phosphorylase Kinase; domain 1 10 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00238 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - qsu:111997733 503.442
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00468 Bda13g00238 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00707 Bda-Chr4:55861787 Bda13g00238 Bda-Chr13:2968627 1.95E-161 dispersed
Bda11g00468 Bda-Chr11:4929788 Bda13g00238 Bda-Chr13:2968627 6.92E-149 dispersed
Bda13g00238 Bda-Chr13:2968627 Bda07g01515 Bda-Chr7:28206869 8.23E-79 dispersed
Bda11g00487 Bda-Chr11:5151101 Bda13g00238 Bda-Chr13:2968627 5.07E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g193 . . . . . . . . Cmo08g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00238 . . . . . . . Cma08g01304 . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69993 PF07714 PK_Tyr_Ser-Thr 4.30E-44 CL0016 Bda PK