Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00247 ATGGAACACCCCTCTTCATCTAAGGAAAAAGGGATGGGTCGTTGGGAAACTTCAAGGGGGCAATTGGAAAGCTTCATGCCACTGGATGGGGGCATGGGGAATCTCAGCTTTGAGGATGTCTATGGCAACTTTGCCAACCAATCGACTCTTGATGCTACTGCTGGATGGTGCTACAGTTCAGCTGGAGATCCTATTTTTCCTTCTGAGTTGTCTTTGGTTCCATCAATGCCTTGTACATCTTTCGATCCTTCAAATTTTGTGGAAGATAATAGCGAGGCATTCTCCATGAATGAAATCAGTGGTGTCACCAATTCCATGGGGAGTTCGTTCAATTGTGGGGACAAGGGTCTGTTTCATCAACTGGAATCTGTATTCAGATTTGCAATAGATTCAAGCGATGTAAATGAGTCAGAATCTAAACAAAATAATGTTATGGACACTGGTAGTTATATTATCTCTAGGCCTTTTGGATGGTCCCTTGATGAAAGAATGCTTAGGGCATTGGCCTTATTCAAGGAATCTTCTGATGAGGGTATTTTGGCTCAAGTATGGGTTCCTATGAAGCATGGGAATCAGTATGTTTTGACAACTAGTGAGCAACCTTATTTGCTTGATCAAATGCTGACGGGGTTTCGTGAAGTTTCTAGAATGTTCACATTTTCTGCAGAAGAGAAACCAGGTGCAGTCCTTGGTCTTCCTGGTCGGGTGTTTGCTTCTAAAATTCCAGAGTGGACTTCTAATGTTAGATACTACAAAAAGGGAGAATATCTCCGTGTGGAGCATGCTCTTGGTCATGACGTTCGAGGGTCAATTGCATTACCAGTTTCCGATTTCCAATCTGAAATGTCATGTTGTGCGGTACTTGAACTTGTGACTAATAAAGAAAAACCCAATTTTGACATGGAAATGGAAGTAGTCTGTCAAGCACTTCAGGCCGTTAATTTGAGGACAACTCCGTCACCACGGCTTCTACCCCATAGCCTTACAAATAATCAGAAATCTGCGTTGGCTGAAATAACCGATGTCCTACGAGCCGTATGCCATGCACATAGACTGCCTCTAGCGCTTATATGGATACCCTGCTATTATACCACGGGAGCGGATGATGGATCTGCGAGAGTCCATGTTAGAGATAGTACTATCGGACCCCACAAAAAATGTATCATATGCATCGAAGAAACGGCTTGTTATGTAAATGATAAAACCATGCAAGATTTTTTGAATGTCTGCACAAACCATTATCTAGAGGAAGGACAAGGGATTGTTGGGAAAGCCCTTCAGTCGAATCATCCCTTTTTTAATCCTGATGTGCAGGCTTATGATATAAATGAATATCCACTTGTCCATCATGTCCGGAAGTTTGGTTTGAATGCTGCAGTTGCAATCCGGCTCAGAAGCACTTATACGGGTGTTGATGACTATATTTTAGAGTTGTTTTTACCTGTCAATATGACGGGGAGTACGGAACAGCAACTCCTGTTGAACAGCCTCTCTGGGACCATGCAGAGGATATGTAGAAGCTTGAGGACTGTTTCGAATGTAAACTTCGGATGCGCTGAGCATCCTAAAGTTGAATTTCAGGACGAGGCAGTTCAAAAGTTCACTCCTATTTCTTCTAGAATTTCGAAATCAAGAACATCGGATACCTGTGCAAAGGAGAAATTGAAGTTGTCGAAGTCGGCCAATGACGAAGTTGAAACAAACTGTCCTTCTGACCTGACAACTAGTGGATCCCGGAGACTATTGGAGAAGAAACGAAGTACAGCTGAGAAAAATGTCAGCTTGAGTGTTCTTCAGCAATACTTTTCTGGAAGTCTTAAGGATGCTGCAAAAAATATTGGCGTTTGTCCCACTACCTTAAAAAGGATATGCAGACAACATGGGATTTCGAGATGGCCATCTCGGAAAATCAACAAGGTGAACCGATCCTTGAGGAAAATAAAAACGGTGCTTGATTCTGTTCAGGGGGTGGAGGGAGGATTGAAGTTTGATCCGTCTACTGGGGGTTTTATTGCCACTGGCACTCCGATGGAAGAATTTAACGGGCAAAGTAGTTTTCTTTTGCCTGAGAAAAAGCCTTGTTGTAGAGAAGCACCAGCCTTTAACAATCCAGTTTCAGTCCCTGGAGCGTGTTTTAATGGTCACAGTTCTTCGATTAAGTTGGAAGACGACGAGTTTCTTATCGCCGGAGACGACATAATACCGTCGATAAGTATTCCGGAAAGGAAATCTGACATTCTGCAAGTGAACCTTAGCGGCGACTCGAAGAGCTCGAGCTCATTGGCTGCTGATGAGATGGACACTGGAGGGGAAGCTGATGATGGAGTCGTGGAGCACAATCACCCACTTTCGTCAAGCACGGGGGACTCGTCAAGTGGATCTCGTAGCCTCCTTCACGGCAGTTCATCGGGCTCTCAAAGCTTTGTTGGCCAGAAGTATCCGAAAGACAAAATAAGCTGTGTCGACAGTGGATCAAAGATCACCATCAAAGCTTCATACGGAGAAGATATGATTCGATTCAAATTCGATCCGTCTTGGGGTTATTTTCAACTCAATGAAGAAGTGGCCAAGAGGTTTAAATTGACGAGCGGGTCGTTCGAACTCAAGTATCTAGACGACGAAAAAGAATGGGTAATGCTAGCTTGTGATTCGGATTTGCAAGAGTGTCTCGAGCTGATGGAAGATTTCGGGGCAAGAACTGTGAAGTTCCTCGTCCGGGATAGGCCTTTTGCGGTGAGCAGTTCAGCCGGTAGCTGCTGCAATCTCTCTGGAGATTGA 2778 44.1 MEHPSSSKEKGMGRWETSRGQLESFMPLDGGMGNLSFEDVYGNFANQSTLDATAGWCYSSAGDPIFPSELSLVPSMPCTSFDPSNFVEDNSEAFSMNEISGVTNSMGSSFNCGDKGLFHQLESVFRFAIDSSDVNESESKQNNVMDTGSYIISRPFGWSLDERMLRALALFKESSDEGILAQVWVPMKHGNQYVLTTSEQPYLLDQMLTGFREVSRMFTFSAEEKPGAVLGLPGRVFASKIPEWTSNVRYYKKGEYLRVEHALGHDVRGSIALPVSDFQSEMSCCAVLELVTNKEKPNFDMEMEVVCQALQAVNLRTTPSPRLLPHSLTNNQKSALAEITDVLRAVCHAHRLPLALIWIPCYYTTGADDGSARVHVRDSTIGPHKKCIICIEETACYVNDKTMQDFLNVCTNHYLEEGQGIVGKALQSNHPFFNPDVQAYDINEYPLVHHVRKFGLNAAVAIRLRSTYTGVDDYILELFLPVNMTGSTEQQLLLNSLSGTMQRICRSLRTVSNVNFGCAEHPKVEFQDEAVQKFTPISSRISKSRTSDTCAKEKLKLSKSANDEVETNCPSDLTTSGSRRLLEKKRSTAEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIKTVLDSVQGVEGGLKFDPSTGGFIATGTPMEEFNGQSSFLLPEKKPCCREAPAFNNPVSVPGACFNGHSSSIKLEDDEFLIAGDDIIPSISIPERKSDILQVNLSGDSKSSSSLAADEMDTGGEADDGVVEHNHPLSSSTGDSSSGSRSLLHGSSSGSQSFVGQKYPKDKISCVDSGSKITIKASYGEDMIRFKFDPSWGYFQLNEEVAKRFKLTSGSFELKYLDDEKEWVMLACDSDLQECLELMEDFGARTVKFLVRDRPFAVSSSAGSCCNLSGD 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3105543 3111401 - Bda001128.3 Bda13g00247 18378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00247 925 MobiDBLite consensus disorder prediction 752 810 - -
Bda13g00247 925 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 758 - -
Bda13g00247 925 SMART PB1_new 826 908 IPR000270 GO:0005515
Bda13g00247 925 Pfam PB1 domain 827 907 IPR000270 GO:0005515
Bda13g00247 925 ProSiteProfiles PB1 domain profile. 826 908 IPR000270 GO:0005515
Bda13g00247 925 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Bda13g00247 925 SUPERFAMILY CAD & PB1 domains 819 907 - -
Bda13g00247 925 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 757 919 - -
Bda13g00247 925 Pfam RWP-RK domain 592 640 IPR003035 -
Bda13g00247 925 PANTHER PROTEIN NLP8 757 919 IPR045012 GO:0003700
Bda13g00247 925 Gene3D - 822 906 - -
Bda13g00247 925 MobiDBLite consensus disorder prediction 780 810 - -
Bda13g00247 925 CDD PB1_NLP 827 907 IPR034891 -
Bda13g00247 925 PANTHER PROTEIN NLP8 7 758 IPR045012 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00247 - - - qsu:112032892 996.112
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00482 Bda13g00247 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00458 Bda-Chr8:4769342 Bda13g00247 Bda-Chr13:3105543 6.28E-24 dispersed
Bda11g00974 Bda-Chr11:9496242 Bda13g00247 Bda-Chr13:3105543 1.14E-130 dispersed
Bda13g00247 Bda-Chr13:3105543 Bda14g00798 Bda-Chr14:6156420 3.69E-07 dispersed
Bda11g00482 Bda-Chr11:5105560 Bda13g00247 Bda-Chr13:3105543 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00162 . 208 982 NLP Transcription Factor Family AT1G64530 52.8 3.9e-216 748.0
Bda08g00451 . 173 966 NLP Transcription Factor Family AT1G64530 51.9 7.0e-213 737.3
Bda06g00162 . 287 982 NLP Transcription Factor Family AT4G24020 54.4 6.7e-200 694.1
Bda08g00451 . 252 966 NLP Transcription Factor Family AT4G24020 55.2 7.4e-199 690.6
Bda08g00458 . 233 927 NLP Transcription Factor Family AT4G24020 54.2 4.1e-189 658.3
Bda11g00482 BCT 27 710 NLP Transcription Factor Family AT2G43500 51.0 1.4e-168 590.5
Bda13g00247 BCT 152 918 NLP Transcription Factor Family AT3G59580 53.3 4.7e-209 724.9
Bda11g00482 BCT 142 679 NLP Transcription Factor Family AT3G59580 58.3 2.0e-167 586.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16857 PF00564 PB1 4.80E-16 CL0072 Bda TF