Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00251 ATGGCGAATCTCGTCCCTGGTGTGCTCCTCAAGCTTCTTCAACACATGAATACAGACGTGAAAGTTGCAGGGGAGCATAGGTCGTCTCTTTTGCAGGTCGTCAGTATCGTCCCAGCTCTTGCCGGAAGTGAGCTTTTTCCAAACCAAGGTTTTTATCTAAAAGTCTCTGATTCTTCTCACGCCACATACGTTTCACTTCCCGATGAACACGACGATCTAATTCTCAGCGATAAAATCCAATTGGGTCAGTTCATTCACGTCGAACGGCTGGAATCGGCTTCTCCGGTCCCAATTCTTCACGGTTTTCGGCCGATTCCCGGCCGACACCCTTGTGTGGGAAGCCCGGAAGACATTGTCGCGACTCATTCTCTTAATTTTCTCAGTAGTTCTTCTGTGAGTTCTAAGACCGGCAAGGTGAAATCGGGTTCAAAGGAGAAATCTTCGAATCTAAGATTGAACAGGATTAGTGTTAAGGAAGAACAATCCGAGAAGAAAGTGCCGTCTTTTAGTCGATCTAAATCGAATTTATCCAAAGCTGCAATGAATTTGGACGTGAAAAGGGAATCATTGACTAGATTTAAGTCTTCCAAGTCGATCCCTTCGTCTCCAACGAGTTGTTATTCGTTGCCAACTTCGTTCGAAAAATTTTCCCGTGGGATCAAGCAACAAGAAGCAAAGATCAAGGGGCTAGAGAAAGGAACAGCTCGGGTGGGGCTACCAGAAAAGTCGGCCTCTGTTCGATCTGCCAGTCCGACTGTAAGGAAAGTTTCGATGGTTAATCCGATAAGAAATTTGGTTCAGGGTATTGAGCTGGGGGCTAAGGCTCTGAGGAAGAGTTGGGAAGGGAATATGGAGGTAAAGAATAAAGATAACTCAAAATTTCGAGCTACCAAGCTCGAGCCAAAGCCCAATCTCCTGAGTTCTGCTCCTAGAAAAAGTACGCCAAGCGAAAAGATGCAATCGAAAGAGGAGAACAAGGTTCAGCTATCCACCAAGTCGGCAAAAGAGGAGAACAAAGTTCAGACCTCGAAGAAATCTGCAGCAAACGGAGATGGGGACGGGGAGAACTCAAATAAGAAAAGAACTTCAGCTGAAAAGAAATTGCCAAATGATTCAGCTCATAAAGGGCCTCTGGGAAATTTGGTAAAGATCCCATTGAATAATAGAAGATTGGCAGACAGTCATCTGTCGTGGGCGTCCCTCCCACCATCGCTTGCCAAGCTCGGAAAGGAAGTTTTGAAGCACAGAGATGCAGCTCAAACAGCTGCAGTAGAGGCAATGCAAGAAGCTTCTGTGGCAGAGAGCATACTTCGATGTTTAAGCACATATTCTGAGCTAACCATTTCTGCCAAAGAGGACAACCCACAACCTACAGTAGAGCAGTTTTTGTCCCTCCATGCTAGCTTGACCCGTGCTCGTACTATCACCGACTTGCTTTTTAAAACTATTCCCTCCCAATCATCACCGGAAGGTGAAGAGGCGCCATCGGAAGAAGCCGTAAAACTGACTTCGGACAGAAGAAAATTAGCAACTTTATGGATCCAAGCCGCTTTGGTCTCGAATCTATCGACTTTTTCGGTATACAGCAAGGAACCTAATTTGATTCCGGCTCCAATTCAGAAAAACTCAGGGAGTCAACCTCTACTGGTTCTTGAAAATTCGTCCAAAAACTCTTCATCCAAACCCATATCCAAAACTCGTCAGGCGCTCGGATCGAAGTCTGTATCCACGATGACATCTCGTCGTGTAGGTGATGGAGCAACTATTAATCAAAAGCCTCATGTTCAACCTTTGCAGGAATGGGTTAGAGGCAATGGCCTCAATGAAGCTGTTGACTTAGCAGACATGTTACGGACTCAATCGCAAGGCTGGTTTCTCGGGTTTGTGGAGAGATTCCTTGACGCAGAAGTGGACACATCGGTTTTGTCAGATAACAGTCAAGTAGCCGGGATTTTGACCCAGCTCAAGAGCGTAAATGATTGGCTGGACGAGATTGGATCGACCAAAGACGAAGAAGTAGAAACCTCGCACGTTTCATCCGAGACAATAGACAGGCTACGGAAGAAGATTTACGAGTATCTTCTCACACACGTCGAATCTGCAGCTGCTGCACTTGGCACTGGATCTCAACCACCATCTCAGGTCGATAAAAACGAACAGAAAGTACGAAGATGA 2175 45.98 MANLVPGVLLKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGSELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFIHVERLESASPVPILHGFRPIPGRHPCVGSPEDIVATHSLNFLSSSSVSSKTGKVKSGSKEKSSNLRLNRISVKEEQSEKKVPSFSRSKSNLSKAAMNLDVKRESLTRFKSSKSIPSSPTSCYSLPTSFEKFSRGIKQQEAKIKGLEKGTARVGLPEKSASVRSASPTVRKVSMVNPIRNLVQGIELGAKALRKSWEGNMEVKNKDNSKFRATKLEPKPNLLSSAPRKSTPSEKMQSKEENKVQLSTKSAKEENKVQTSKKSAANGDGDGENSNKKRTSAEKKLPNDSAHKGPLGNLVKIPLNNRRLADSHLSWASLPPSLAKLGKEVLKHRDAAQTAAVEAMQEASVAESILRCLSTYSELTISAKEDNPQPTVEQFLSLHASLTRARTITDLLFKTIPSQSSPEGEEAPSEEAVKLTSDRRKLATLWIQAALVSNLSTFSVYSKEPNLIPAPIQKNSGSQPLLVLENSSKNSSSKPISKTRQALGSKSVSTMTSRRVGDGATINQKPHVQPLQEWVRGNGLNEAVDLADMLRTQSQGWFLGFVERFLDAEVDTSVLSDNSQVAGILTQLKSVNDWLDEIGSTKDEEVETSHVSSETIDRLRKKIYEYLLTHVESAAAALGTGSQPPSQVDKNEQKVRR 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3183575 3186874 + Bda001132.1 Bda13g00251 18382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00251 724 MobiDBLite consensus disorder prediction 553 579 - -
Bda13g00251 724 MobiDBLite consensus disorder prediction 704 724 - -
Bda13g00251 724 Pfam Plant protein of unknown function (DUF936) 4 705 IPR010341 -
Bda13g00251 724 MobiDBLite consensus disorder prediction 354 372 - -
Bda13g00251 724 Coils Coil 319 339 - -
Bda13g00251 724 MobiDBLite consensus disorder prediction 139 167 - -
Bda13g00251 724 MobiDBLite consensus disorder prediction 287 381 - -
Bda13g00251 724 PANTHER EXPRESSED PROTEIN 1 722 IPR010341 -
Bda13g00251 724 MobiDBLite consensus disorder prediction 132 173 - -
Bda13g00251 724 MobiDBLite consensus disorder prediction 316 342 - -
Bda13g00251 724 PANTHER DUF936 FAMILY PROTEIN 1 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00251 - - - zju:107421786 896.345
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00478 Bda13g00251 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02223 Bda-Chr1:58061427 Bda13g00251 Bda-Chr13:3183575 1.24E-39 dispersed
Bda04g00761 Bda-Chr4:56798630 Bda13g00251 Bda-Chr13:3183575 8.53E-20 dispersed
Bda04g00763 Bda-Chr4:56821898 Bda13g00251 Bda-Chr13:3183575 5.25E-21 dispersed
Bda10g01022 Bda-Chr10:44356226 Bda13g00251 Bda-Chr13:3183575 2.78E-09 dispersed
Bda05g00613 Bda-Chr5:54199583 Bda13g00251 Bda-Chr13:3183575 2.04E-08 transposed
Bda09g01166 Bda-Chr9:42489165 Bda13g00251 Bda-Chr13:3183575 1.53E-27 transposed
Bda11g00478 Bda-Chr11:5048458 Bda13g00251 Bda-Chr13:3183575 1.19E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1277 . . . . . Bpe14g01063 . . . Cmo17g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00449 . Bda11g00478 Bda13g00251 . . Bma02g00967 . . . . . Cma17g00609 Car08g00175 Car17g00576 . Cpe17g01086 . . . . . . . . . . . . . . . . . Cme11g02453
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009199 1 1 2 1 2 1 2 0 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00251 Bda_Chr13 FPKM 20.366985 21.829756 16.916075 15.945689 18.262503 14.873649 16.836445 13.902889 14.871076