Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00252 ATGGTCTCTTTATATTCGAATATTGTTCTTGCTGTTTTACTCTGTTTTATCATATGCTATGTTTCAGGAGATGCTCTATATGCTTTGAGAAACTCACTAAATGCTACAGCAAATCAACTCACAGATTGGAACCCAAATCAAGTTAACCCATGCACTTGGTCCAATGTTATTTGCACCGACAATCTCGTAACTTCTGTATCATTGTCGTCAATGGGATTCACAGGAACCTTGTCCTCAAAAGTTGGAGCTCTAAAATCTCTCAACACTCTAAATTTACAAGGAAATTACATTACTGGTGAAATACCTGATGAGCTTGGAAATATTACGAGTTTGGTGAGCTTGGATTTGGAAAACAACAAGTTAACAGGTCAAATACCATCCTCCCTTGGAAATCTTATGAGACTTCAGTTCTTGACACTGAGTCAAAATAATCTTTCAGGGACCATTCCTGAGTCACTTTCACTTCTTCCGGGCCTGATAAATATTTTGCTCGATTCAAATAATCTCAGTGGTCCAATTCCGGAAAAATTATTTCGAATTCCAAAATATAAGTATGAAAAAATTTGTGATGGAGTTTTGAATTGTTATTATGGAATTTCAATCTTGGGTTTTTTATTTTATTTTTGTGTTGGCTCATTTTTCCACTTGTTGACAGGCAGTTCACACAAGCCGAAAATTGGCATTATAGTTGGGCTTGTTGGAGGGTTTGCAATTATTCTCTTTTTGGGTGGATTTTTATTTTGTCTTTGCAGAGGTAGACACAAAGGTTGCAAGCGTGAAATTTTTGTGGATGTCGCAGGCGAAGTTGACCGAAGAATCGCATTTGGTCAACTGAAAAGATTTGCATGGAGAGAGTTACAGTTAGCAACAGACAATTTCAGCAAGAAAAACGTGTTGGGACAAGGAGGATTCGGAAAGGTTTACAAAGGGGTGCTTTCCGACAACACGAAAATTGCAGTGAAACGCCTCACCGACTACGAAAGCCCAGGAGGAGATGCAGCCTTCCAACGAGAAGTTGAGATGATTAGTGTAGCCGTTCATAGGAATCTACTACGACTCATCGGATTCTGCACCACGACAACAGAACGCCTTCTGGTTTATCCCTTCATGCAAAACTTAAGCGTTGCCTATCAACTAAGAGAAATTAAACCTGGAGATCCTGTTTTGGATTGGCCTACGAGAAAGCGAATTGCCTTAGGCACCGCTAGGGGATTGGAGTATCTTCACGAGCATTGCAATCCGAAGATCATTCATCGTGATGTTAAGGCCGCTAATGTGTTGCTTGATGAGGATTTTGAAGCAGTTGTAGGCGATTTCGGTTTGGCAAAGTTGGTAGATGTTCGGAAGACTAACGTGACCACTCAAGTACGAGGAACAATGGGTCACATAGCCCCCGAGTACTTGTCGACAGGAAAGTCGTCGGAAAGGACTGATGTTTTTGGTTATGGCATCATGTTGTTGGAACTTGTGACCGGTCAACGGGCAATTGACTTTTCGCGGTTGGAAGAAGAAGACGATGTTTTACTGCTAGACCATGTCAAGAAGCTGGAACGGGAGAAGAAACTGGACGCCATCGTCGACAACAACCTCGATAAAAACTATAACATCGAAGAGGTGGAAATGATGATTCAAGTTGCGTTGCTTTGCACCCAACCATCACCGGACGAGAGGCCAGCCATGTCAGAGGTGGTCCGAATGCTGGAAGGAGAGGGGCTCGCAGAGAGATGGGAAGAATGGCAACACGTAGAAGTATCTCGGCGAGAGGAATACGAGAGGTTGCAGAGAAGATTTGATTGGGGCGAAGATTCAATTTACAACCAAGATGCTATTCAATTATCCGGAGGAAGATGA 1851 42.25 MVSLYSNIVLAVLLCFIICYVSGDALYALRNSLNATANQLTDWNPNQVNPCTWSNVICTDNLVTSVSLSSMGFTGTLSSKVGALKSLNTLNLQGNYITGEIPDELGNITSLVSLDLENNKLTGQIPSSLGNLMRLQFLTLSQNNLSGTIPESLSLLPGLINILLDSNNLSGPIPEKLFRIPKYKYEKICDGVLNCYYGISILGFLFYFCVGSFFHLLTGSSHKPKIGIIVGLVGGFAIILFLGGFLFCLCRGRHKGCKREIFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSKKNVLGQGGFGKVYKGVLSDNTKIAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTTTERLLVYPFMQNLSVAYQLREIKPGDPVLDWPTRKRIALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKKLDAIVDNNLDKNYNIEEVEMMIQVALLCTQPSPDERPAMSEVVRMLEGEGLAERWEEWQHVEVSRREEYERLQRRFDWGEDSIYNQDAIQLSGGR 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3193202 3197230 + Bda001133.2 Bda13g00252 18383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00252 616 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Bda13g00252 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 616 - -
Bda13g00252 616 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 616 - -
Bda13g00252 616 ProSiteProfiles Protein kinase domain profile. 293 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00252 616 SUPERFAMILY Protein kinase-like (PK-like) 273 568 IPR011009 -
Bda13g00252 616 SUPERFAMILY L domain-like 24 183 - -
Bda13g00252 616 Pfam Leucine rich repeat N-terminal domain 23 58 IPR013210 -
Bda13g00252 616 Gene3D Ribonuclease Inhibitor 21 192 IPR032675 -
Bda13g00252 616 Pfam Protein kinase domain 294 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00252 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Bda13g00252 616 SMART serkin_6 293 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00252 616 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Bda13g00252 616 Gene3D Transferase(Phosphotransferase) domain 1 370 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01102 Bda-Chr6:39196892 Bda13g00252 Bda-Chr13:3193202 0 dispersed
Bda07g00862 Bda-Chr7:10042140 Bda13g00252 Bda-Chr13:3193202 5.16E-21 dispersed
Bda09g00911 Bda-Chr9:25761206 Bda13g00252 Bda-Chr13:3193202 2.69E-165 dispersed
Bda11g01277 Bda-Chr11:13373417 Bda13g00252 Bda-Chr13:3193202 2.73E-121 dispersed
Bda13g00252 Bda-Chr13:3193202 Bda11g01113 Bda-Chr11:11007129 2.48E-86 dispersed
Bda13g00252 Bda-Chr13:3193202 Bda03g00411 Bda-Chr3:3543626 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69994 PF00069 Pkinase 6.80E-43 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00252 - - csv:116403405 929.472