Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00257 ATGTACAATAATGTTGGAACTCAGCCTAGGGCTCCACAGCCACCATTGAGTTCTTCACCAAATCCATTTGGGAATGCATTTTACGGAGCTGGTTCAGGGCTTATTCGTGGTGGATTAGGCGCATATGGAGAGAAAATCTTTGGATCAAGCTCTGAATATGTTCAAAGCAATATAAGTAGATATTTTTCAGATCCCCAATATTATTTCCAAGTGAATGACCAATATGTGAGAAACAAATTGAAGGTTGTTCTATTTCCTTTTCTTCACAGGGGTCATTGGACTCGAATAACAGAGCCAGTTGGAGGCAGGCTGTCTTATAAACCCCCAATTTATGATATTAATGCTCCAGACTTGTACATTCCATTCATGGCATTTGGCAGTTTTGTTGTTCTTGCGGGGTTTTCATTGGGTCTTCAAGGAAAGTTTAGTCCAGAATCTCTAAATTGGTTGTTTATCAAGGGATTGCTTGGCTGGTTTCTGCAAGTCATGCTGCTTAAAGTAACACTCCTTTCATTGGGAAGTGGCGAGGCACCTTTGTTGGATATTATTGCCTATGCCGGGTATTCTTTCCCCGGGATGTGTGTGGCTGCTGTCGGGAAGATTATGTGGAGGTACTCGTATTATATTTTAATGCCATGGACCTCTTTATGCATGGGAATTTTCTTGGTGAAAACGATGAAGAGAGTCCTTTTTTCTGAGGTGAGAAGTTATGATTCAAGCAGGCATCACTATCTCTTGCTTTTCATTGCTTTGGCCCAGTTTCCTCTCTTCATATGGCTTGGCAACATTAGCATGAATTGGCTCTTT 807 41.39 MYNNVGTQPRAPQPPLSSSPNPFGNAFYGAGSGLIRGGLGAYGEKIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGSFVVLAGFSLGLQGKFSPESLNWLFIKGLLGWFLQVMLLKVTLLSLGSGEAPLLDIIAYAGYSFPGMCVAAVGKIMWRYSYYILMPWTSLCMGIFLVKTMKRVLFSEVRSYDSSRHHYLLLFIALAQFPLFIWLGNISMNWLF 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3237789 3239543 - Bda032843 Bda13g00257 18388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00257 269 PANTHER INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN 1 266 - -
Bda13g00257 269 Pfam YIF1 41 260 IPR005578 GO:0005789|GO:0006888
Bda13g00257 269 PANTHER YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN 1 266 IPR005578 GO:0005789|GO:0006888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00257 K20362 YIF1; protein transport protein YIF1 - tcc:18602466 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00475 Bda-Chr11:4988289 Bda13g00257 Bda-Chr13:3237789 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1194 . . . . . . . . . . . . . Car14g01271 . . Cpe03g01211 . . . . . . . . . . . . . . Cone14ag0575 . . . . . . Cme07g01932 . . . Bda13g00257 . . . Bma06g01420 . . . . . . . . . . . . . . . . Cla07g01448 Cam07g1550 Cec07g1645 Cco07g1608 Clacu07g1538 Cmu07g1507 Cre07g1884 . . . Cme11g02478
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004914 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00257 Bda_Chr13 FPKM 34.181992 32.259434 100.406113 99.763092 11.592032 14.134557 10.618582 42.879608 44.466637