Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00261 GTTCATCACATGTACAAATCAACTTCATCGTCTATATCCTCACAGAACTCCATGGGGACCAGCACCGGTGGCGGCCTAACTCGCTACGGCTCCGCCCCCGGTTCTTTCCTGACCACAGCAGTTGATTCCGTGATCGGAGCGCATCCGAGCTCTTCCGCCGCTGGTGTTCGATCTCAGCAGGGCTTGGTGAACCCCTATTTCTCCTCCGGCGGCGACTCCTCCGTCGAGTCGTCCAGTAAAATCATGTACGCCGCCGCATCCAACAATTCAAGAGGCTTGCAGAGGTCGTACGGCAGCCAGGAGCTGGCGCTTGGAGATTTGAACGGCATTGGAGGTGGATCTTCTTCTTCCTCAACTTCTTCTTCCTCTTCTTCGTCTTTGATGAGGCAGAGAAGCTCACCGGCGGGTTTCTTCTCCCACCTCGCCGCTCCGGACAGCAATGGATATTCAGTTTCAAGGGAAGGTGGGAATTACGGCTCACAACGTGGACCAAGTGGTCTTGGAGTTTCAAGATTGAAGCCTCAGCTGAGCTTCACAAGGCAAGATTCCCTCTCACAGATTTCCGAAGTGTCTGAGAACATAATTGATGGAATCGATTCGAATAATGCACGCCAATCTTACGGCACTGCAACTAGCTTTGGGATTGGCTCTTGGGATGCCACCAATACCGTCGTGTTTTCTTCCCTCCAAAACAAACGACCCAAGAACATCGATCCCGACATGTTCGACTCCCTTAACGTCTTAGATTCTCAGTTTAATCTTCCGGCAAGTCTGGAGATGGCGTCGATGGAGAAGCTACTCCACATTCCCGAAGATTCTGTCCCCTGCAAGATCCGTGCCAAGCGTGGTTGTGCGACTCATCCCCGCAGTATTGCCGAAAGGGAAAGGAGGACGCGAATAAGTGGGAAATTGAAAAAATTACAAGAACTTGTGCCTAACATGGATAAGCAAACAAGCTACGCCGACATGTTGGACTTGGCAGTGCAGCATATCAAGGGACTTCAAAATCAAATCGAGAATCTTCACAAGGACCTTGAGAATTGCACGTGTGGATGCAAATAG 1062 50.85 VHHMYKSTSSSISSQNSMGTSTGGGLTRYGSAPGSFLTTAVDSVIGAHPSSSAAGVRSQQGLVNPYFSSGGDSSVESSSKIMYAAASNNSRGLQRSYGSQELALGDLNGIGGGSSSSSTSSSSSSSLMRQRSSPAGFFSHLAAPDSNGYSVSREGGNYGSQRGPSGLGVSRLKPQLSFTRQDSLSQISEVSENIIDGIDSNNARQSYGTATSFGIGSWDATNTVVFSSLQNKRPKNIDPDMFDSLNVLDSQFNLPASLEMASMEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNQIENLHKDLENCTCGCK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3274217 3277875 + Bda001140.1 Bda13g00261 18392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00261 353 CDD bHLH_AtbHLH_like 289 341 IPR045239 -
Bda13g00261 353 Gene3D - 285 350 IPR036638 GO:0046983
Bda13g00261 353 SMART finulus 290 340 IPR011598 GO:0046983
Bda13g00261 353 MobiDBLite consensus disorder prediction 149 171 - -
Bda13g00261 353 MobiDBLite consensus disorder prediction 110 130 - -
Bda13g00261 353 Pfam Helix-loop-helix DNA-binding domain 289 335 IPR011598 GO:0046983
Bda13g00261 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 349 - -
Bda13g00261 353 MobiDBLite consensus disorder prediction 108 130 - -
Bda13g00261 353 Coils Coil 324 351 - -
Bda13g00261 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 346 IPR036638 GO:0046983
Bda13g00261 353 MobiDBLite consensus disorder prediction 1 26 - -
Bda13g00261 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 334 IPR011598 GO:0046983
Bda13g00261 353 PANTHER TRANSCRIPTION FACTOR BHLH129 25 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00736 Bda-Chr10:41750900 Bda13g00261 Bda-Chr13:3274217 1.05E-41 dispersed
Bda13g00261 Bda-Chr13:3274217 Bda13g01549 Bda-Chr13:38701893 6.37E-35 dispersed
Bda13g00261 Bda-Chr13:3274217 Bda03g01606 Bda-Chr3:55356807 3.70E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16860 PF00010 HLH 4.90E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00261 - - pavi:110769086 395.201