Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00288 ATGGATTCAAATCAGCCATATTGTTGGGGAAGTAGTGGATACATTCAAATGGGTGTCCCTCAACCCATGAGCAAAGAAGCTGAGTATTTGGAAATTAGTGCAGGGGATTACCATTTGTGTGGCCTTAGAAAGCCTTTGATGGGTCGTAAAAGAAGCACTTCCTCGGTCGATTGTTGGGGCTATAACATGACGAAGACGTTTGTTTTCGATGGAGAAATCAACTCGATCTCATCTGGCTCGGAGTTTAACTGCGGATTGTTTGCCGAAAATAGAACTGTTTTTTGCTGGGGGGATGAGACTAGCAGCTGGGTGATCAGCTTGATTCCGAAAAATATGAGGTTTCAAAAGATTGCTTCGGGCGGGTATCATGTTTGTGGGATTTTAGAGGGGGAAAGTTCTAGACCCTTTTGTTGGGGAAGGAGTTTAGACATCGAGGAAGAAATCTCGGGAACATATTCGAGCCAAGGGAATGTCGATTTGGCTCCAAATTATTCGATTCTTTCTGTTGTAGGTGGAAAATTTCATGCCTGCGGAATAAAAAGCGTTGATCGAAGCGTAATTTGTTGGGGTTTCATCGTCAAAACGAGCACTCCGGCCCCTAGTGGAGTCGAAGTTTATGAGATTGCAGCCGGAGATTATTTCACATGTGGAATTTTAGCTGATAAATCGCTCTTGCCGGTTTGTTGGGGTCTCGGATTTCCTTCTTCTCTCCCTTTAGCTGTCTCCCCCGGCCTTTGCAAGTCCACTCCCTGTGCTCCAGGCTTCTATGAGCTGAACCAGACCACTGCTCCTTGTAAGTCGGTAAACTCTCGAGTATGCTTGCCTTGCAGCAATGGCTGCCCACCCGAGATGTACCCTGTTTTCGACTGCACTTTAAAATCGGATAGGCAATGTGTGTATAACTGTTCTAATTGTCACAATGCTGAGTGCTTGTCAAAGTGTTCTAACTCGTTTTCGAGTGGGATCACGGGGAAGAAGAACGAGAAGTTTTGGTCGATGCAATTGCCTGTGATCATTGCCGAGATTTCTTTCGGCGTTTTTTTGGTGACAGTCGTTTCGCTGACTGCAGTTCTATACGTTCGATACAAGTTGAGAAACTGCCAGTGCCCGGGAAAAGAGACAAAGTCGAAGAAAACCAAAGGCGGCGGCACTGCCTTGCAAAAGGATAATGGTAAAATTCGTCCCGATTTGGACGAACTTAAGATACGGAGAGCTCGAACGTTCACTTACGACGAACTTGAGAGGGCCACCGGAGGGTTTAAAGAAGAGTCTCTCGTGGGGAAAGGGAGCTTCTCGTGTGTTTTTCGAGGGGTATTGAAGGATGGGACTGTTGTGGCTGTCAAAAGGGCAATAATGTCTCCGAACGTACAGAAGAATTCAAAAGAGTTCCACACCGAACTAGACTTGCTCTCAAGGCTAAATCATGCCCATCTGCTTAATCTACTCGGATATTGCGAAGAAGGCGGAGAGAGGCTTCTAGTTTATGAGTTCATGGCTCACGGATCGCTTCACCAGCACCTCCACGGGAAGAACAAGGCGTTAAAAGAGCAGTTAGATTGGGTTCGACGGGTCACCATTGCAGTCCAAGCAGCTCGAGGAATCGAGTATTTGCATGGATATGCCTGCCCACCAGTTATTCATCGAGATATTAAGTCCTCAAACATCCTAATCGACGAAGAACACAATGCTCGAGTTGCCGATTTCGGCTTGTCCTTGTTGGGACCCGTCGATAGTAGCTCCCCATTGGCCGAGCTACCGGCAGGGACCCTCGGATATCTCGACCCCGAATACTACAGACTCCACTACCTCACTACGAAATCCGATGTCTACAGCTTTGGAGTTTTGCTATTGGAGATTGTTAGTGGGAGAAAAGCAATTGACATGCAATACGAAGAAGGAAACATAGTCGAGTGGGCAGTGCCGTTGATCAAATCCGGAGACATATCGACAATTCTCGACCCGGTTTTGAAGCTACCGGCCGATATGGAAGCCATGAAAAGGATCACGAATGTGGCCTGTAAGTGCGTGAGGATGAGAGGGAAGGAGAGGCCGTCGATGGATAAAGTCACGACGGCTTTGGAACGATCTCTCGCTCAGTTGATGGGGAGCCCGTCAAGTGAGCAGCCTATTTTACCGACTGAGGTGGTTCTGGGAAGTAGTAGATTGCACAAAAAATCTTCTCAAAGATCATCGAATCGATCAGAGACAGACGTGGCAGAGGGAGAGGATCAAAGATTCGAATTTCGAGCTCCATCGTGGATTACATTTCCGAGTGTTACTTCGTCTCAGAGGAGAAAATCCTCAGTTTCAGAGGCAGATGTTGATGGGAAGACTTCAGAGCAAAGAAACAATGGAAATGTGAGTGGTTTTGTTGATGGATTGAGAAGTTTGGAGGAAGAGATTGGGCCTGCTTCTCCGCAGGAAAAGCTGTTCTTAGAACACAATTTCTGA 2451 46.92 MDSNQPYCWGSSGYIQMGVPQPMSKEAEYLEISAGDYHLCGLRKPLMGRKRSTSSVDCWGYNMTKTFVFDGEINSISSGSEFNCGLFAENRTVFCWGDETSSWVISLIPKNMRFQKIASGGYHVCGILEGESSRPFCWGRSLDIEEEISGTYSSQGNVDLAPNYSILSVVGGKFHACGIKSVDRSVICWGFIVKTSTPAPSGVEVYEIAAGDYFTCGILADKSLLPVCWGLGFPSSLPLAVSPGLCKSTPCAPGFYELNQTTAPCKSVNSRVCLPCSNGCPPEMYPVFDCTLKSDRQCVYNCSNCHNAECLSKCSNSFSSGITGKKNEKFWSMQLPVIIAEISFGVFLVTVVSLTAVLYVRYKLRNCQCPGKETKSKKTKGGGTALQKDNGKIRPDLDELKIRRARTFTYDELERATGGFKEESLVGKGSFSCVFRGVLKDGTVVAVKRAIMSPNVQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNKALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPVDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEIVSGRKAIDMQYEEGNIVEWAVPLIKSGDISTILDPVLKLPADMEAMKRITNVACKCVRMRGKERPSMDKVTTALERSLAQLMGSPSSEQPILPTEVVLGSSRLHKKSSQRSSNRSETDVAEGEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVDGKTSEQRNNGNVSGFVDGLRSLEEEIGPASPQEKLFLEHNF 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3617508 3619958 - Bda001174.1 Bda13g00288 18419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00288 816 SUPERFAMILY Protein kinase-like (PK-like) 400 693 IPR011009 -
Bda13g00288 816 MobiDBLite consensus disorder prediction 719 742 - -
Bda13g00288 816 ProSitePatterns Protein kinases ATP-binding region signature. 426 448 IPR017441 GO:0005524
Bda13g00288 816 Gene3D - 1 241 IPR009091 -
Bda13g00288 816 MobiDBLite consensus disorder prediction 759 790 - -
Bda13g00288 816 SMART serkin_6 420 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00288 816 SUPERFAMILY RCC1/BLIP-II 3 191 IPR009091 -
Bda13g00288 816 Gene3D Phosphorylase Kinase; domain 1 393 497 - -
Bda13g00288 816 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 816 - -
Bda13g00288 816 Gene3D Transferase(Phosphotransferase) domain 1 498 706 - -
Bda13g00288 816 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 250 298 IPR001368 GO:0005515
Bda13g00288 816 PANTHER RECEPTOR-LIKE KINASE 1 816 - -
Bda13g00288 816 MobiDBLite consensus disorder prediction 728 742 - -
Bda13g00288 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Bda13g00288 816 Gene3D Tumor Necrosis Factor Receptor, subunit A, domain 2 276 304 - -
Bda13g00288 816 Pfam Protein tyrosine and serine/threonine kinase 423 692 IPR001245 GO:0004672|GO:0006468
Bda13g00288 816 ProSiteProfiles Protein kinase domain profile. 420 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00901 Bda-Chr1:41996970 Bda13g00288 Bda-Chr13:3617508 1.40E-67 dispersed
Bda11g00788 Bda-Chr11:7865024 Bda13g00288 Bda-Chr13:3617508 1.63E-54 dispersed
Bda13g00288 Bda-Chr13:3617508 Bda14g01313 Bda-Chr14:14613964 1.87E-74 dispersed
Bda14g00252 Bda-Chr14:1767877 Bda13g00288 Bda-Chr13:3617508 5.47E-07 dispersed
Bda13g00288 Bda-Chr13:3617508 Bda05g01245 Bda-Chr5:60314525 6.41E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69995 PF07714 PK_Tyr_Ser-Thr 3.30E-44 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00288 - - csv:101210393 1398.26