Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00296 GGGGAAAAGAAGGCGAAGAAGAAGAAGAAATCCAGTTCCGGAAGTGGAGGGATGTTGCTATTAAAGGTGAGGCTAGATCATCAAGTTCAATTCGGGGAGCATGTAGCAATTATAGGGTCTACTAGAGAACTGGGCTCATGGAAGAAGAGTGTTCCTCTGAATTGGAGTGAGAATGGATGGGTTTGCGATTTGGATCTGAAAGGGGGTGATTCAGTTGAGTACAAGTTCGTAATTATTAGAAAGGATAACAACATGTCGTGGGAAGGAGGATCCAATCGAGTTCTCCAGCTTCCTAAGAATGGGGTTTTCAGCTCGGTTTGCCGGTGGAATGCGACTGATGAGGCTTTGGAATTATTGCAATTGGAAGAAGAGGTTGAAGAAGAAGAAGAAGAAAAAAGGGAGGGTGTGAGCAATGATGAATCACTTGAGGAAGTGGAGATGAGCCCTTTTGTGGGTCAATGGCAAGGGAAGGCTATCTCTTTTATGCGATCCAACGAACATGGTAACCGAGAAAATGAGAGAAAATGGGATACCTCTGGTCTTCAGGGATTGGCTCTAAAGTTAGTAGAAGGCGATCGAAATGCCAGGAATTGGTGGAGAAAGCTTGAAGTTGTACGTGAGCTTCTAGTTGAAAGTTTGCCTTCTGAGGCTCGGTTGGAGGCTCTAATATATTCTGCCATCTACCTTAAGTGGATAAACACGGGCCAAATTCCTTGTTATGAAGATGGAGGTCACCACCGACCTAATAGGCATGCTGAGATTTCCAGGCTTATATTCCGCGAATTGGAAAGGATCTCATACAAGAAAGCTATTTCACCCCAGGAGGTGCTTGTTCTCCAAAAAATTCATCCATGTTTACCATCTTTTAAAGCAGAGTTTACTGCTTCGGTACCTTTAACTCGAATACGAGATATTGCTCATCGGAATGACATCCCACATGACCTCAAGCAAGAAATCAAACACACAATACAAAACAAGCTTCATCGTAATGCTGGTCCAGAAGATTTAATTGCTACAGAAGCAATGCTGGCAAGAATCACTAAAAACCCTGGTCAATACAGCGAAGCATTTGTGGAACAGTTCAAGATATTCCATCGTGAACTGAAAGACTTTTTTAATGCTGGAAGTCTTGCTGAACAACTTGAATCAATTCGGGGATCTATGGATGAACGCGGTATATCAGCTCTTTCAAGCTTCTTGGATTTGAAACGGAGCTTAGATGCCATTGACGAATCAAATAATTCTGTGGAAAAAACTGGCATAGACCTGTTGTTCAAAATTATGCAATCTTTGAATGCAGTGAGAGAAATAGTTGTTAAAGGTCTTGAAAGTGGTCTAAGAAATGATGCTCCTGATGCTGCGATTGCTATGCGCCAAAAGTGGCGTCTTTGTGAGATTGGGCTTGAGGACTACTTATTTGTTCTTCTGAGTAGGTTCCTCAATATACTTGAAGCAACGGGAGGGGCTGACTGGCTTGCACGAAATGTAGAATCGAAAAGCGTAAGCTCTTGGAATGATCCTCTTGGTGTCCTTATCATTGGCATTAATCAGTTGCTGATTTCTGGTTGGAAGCCAGAAGAGTGTACAGCTATTAAGAATGAACTTTTTGCTTGGAAGGACAGAGGTCTCTCTGAAAGTGAAGGAAGTGAAGATGGGAAGAGAATCTGGGCATTGAGGCTCAAGGCGACTCTTGATAGAGCTAGAAGACTAACTGAAGTATACTCTGAAGCTCTTCTTCAAATATTCCCTGAGAAAGTCCAGACGCTAGGAAAGGCTTTAGGTATCCCTGAGAACAGTGTAAGAACTTATGCAGAGGCTGAAATTCGGGCAAGTGTAATTTTTCAGGTCTCCAAATTTTGCACTGTTCTGTTGAAAGCAGTCAGAATTTCCCTTGGTTCTCAGGGTTGGGACATTCTTGTACCAGGAGCAGCTTCGGGAATCCTAATACAGGTGGAGAGCATTATCCCTGGGTCTCTACCAGCTTCTGAAGGACCTTTCATACTCATGGTTGACAAAGCTGATGGAGATGAGGAGGTAACAGCTGCTGGAAGTAACATAGTGGGCATTGTACTTCTACAAGAGCTCCCTCATTTATCTCATCTGGGTGTTCGGGCTAGACAAGCAATTGTTTTTGTGACTTGTGAAGACGAGGACAGAGTTGGTGATATTAAGAAACTTAGTGGACAATTTGTGAGGTTGGAAGCGTCCTCGACGGCTGTTAATTTGTTTTTGTTACCCGATAAGAACACTGATAATTCTGCAACAAATCTTTCAACTGTTAATTCATCTGGAATCGAGTCTTCTGGGCTGGTTGATCCTCTCCGATCATCTGTTAAAGCTCCTTACTCCGGTCAGATCTTTGTCAAAGGCGTTGCTGCTGGAGGTGTCATGTTACTTGCAGATGCAGACGCCCAGATTTCCGGTGCCAAGGCTGCTGCTTGTAGTCGTTTGGCATCTTTGGCTGCCCTTTCTGAAAAAAGCTTAATTCTTGCTATCAAGACAGTTGAATTCTTTCTTATACTAATCTCTGATGTGATTGCAGTTTATAGCGAACATGGGGTCCTGGCTTCATTTGGTGTCCCTAAAGGGGCAGTGATTCCATTTGGCTCCATGGAAAAGGCGGTAGAGCAGAGCGGATCAATGGAATTTTTCAAGTCTTTAATGGACCAGGTAGAAACGGCCAAGCTAGAAGGCGGTGAGCTCGACAAACTCTGCTCCAACCTCCAGGAACTGATATCATCTCTCCAGGTTCCAAATCAGATCATCGATAGCTTAGGGAGAATATTTTCTAGCAAAGCACGGTTAATCGTTCGATCTAGTGCTAACGTCGAAGATCTGGCTGGAATGTCTGCAGCTGGACTTTACGAATCGATTCCTAATGTCAGTCCTTCAAATCCGGTAGTTTTTGGAAATGCCGTTAGTCGTGTATGGGCTTCGTTATATACTCGTAGAGCGGTTTTGAGTCGCCGAGCTTCCGGAGTACCTCAAAATAAAGCTTTAATGGCAGTTCTGGTTCAAGAAATGCTCTCACCGGACTTATCCTTTGTGTTACACACTCTCAGCCCAACCGACCAAGACAACAAATCCGTCGAGGCCGAGATTGTTTCCGGACTCGGCGAAACTCTGGCTTCCGGCACTCGTGGAACGCCCTGGCGTTTATCATCTGGGAAATTTGACGGCCTCGTTCGAACCCTTGCATTTGCGAACTTCAGTGAGGAACTGGTGGTTTTAGGATCAGGTCCCGCCGATGGTGAAGTGATCCGGTTGACGGTTGATTACAGTAAGAAACCATTGACTGTAGATCCCATCTTTCGCCATCAACTCGGTCAGCGTCTGTCGGCAGTCGGTTTTTTCCTCGAGCAGAAGTTTGGTTGTGCCCAGGACGTCGAAGGATGTGTCGTCGGCAAAGATATCTTTGTTGTCCAGACCCGCCCGCAACCACTGTAG 3447 44.71 GEKKAKKKKKSSSGSGGMLLLKVRLDHQVQFGEHVAIIGSTRELGSWKKSVPLNWSENGWVCDLDLKGGDSVEYKFVIIRKDNNMSWEGGSNRVLQLPKNGVFSSVCRWNATDEALELLQLEEEVEEEEEEKREGVSNDESLEEVEMSPFVGQWQGKAISFMRSNEHGNRENERKWDTSGLQGLALKLVEGDRNARNWWRKLEVVRELLVESLPSEARLEALIYSAIYLKWINTGQIPCYEDGGHHRPNRHAEISRLIFRELERISYKKAISPQEVLVLQKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLIATEAMLARITKNPGQYSEAFVEQFKIFHRELKDFFNAGSLAEQLESIRGSMDERGISALSSFLDLKRSLDAIDESNNSVEKTGIDLLFKIMQSLNAVREIVVKGLESGLRNDAPDAAIAMRQKWRLCEIGLEDYLFVLLSRFLNILEATGGADWLARNVESKSVSSWNDPLGVLIIGINQLLISGWKPEECTAIKNELFAWKDRGLSESEGSEDGKRIWALRLKATLDRARRLTEVYSEALLQIFPEKVQTLGKALGIPENSVRTYAEAEIRASVIFQVSKFCTVLLKAVRISLGSQGWDILVPGAASGILIQVESIIPGSLPASEGPFILMVDKADGDEEVTAAGSNIVGIVLLQELPHLSHLGVRARQAIVFVTCEDEDRVGDIKKLSGQFVRLEASSTAVNLFLLPDKNTDNSATNLSTVNSSGIESSGLVDPLRSSVKAPYSGQIFVKGVAAGGVMLLADADAQISGAKAAACSRLASLAALSEKSLILAIKTVEFFLILISDVIAVYSEHGVLASFGVPKGAVIPFGSMEKAVEQSGSMEFFKSLMDQVETAKLEGGELDKLCSNLQELISSLQVPNQIIDSLGRIFSSKARLIVRSSANVEDLAGMSAAGLYESIPNVSPSNPVVFGNAVSRVWASLYTRRAVLSRRASGVPQNKALMAVLVQEMLSPDLSFVLHTLSPTDQDNKSVEAEIVSGLGETLASGTRGTPWRLSSGKFDGLVRTLAFANFSEELVVLGSGPADGEVIRLTVDYSKKPLTVDPIFRHQLGQRLSAVGFFLEQKFGCAQDVEGCVVGKDIFVVQTRPQPL 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3689299 3705271 + Bda001182.1 Bda13g00296 18427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00296 1148 Gene3D Immunoglobulins 19 110 IPR013783 -
Bda13g00296 1148 Gene3D - 1010 1146 - -
Bda13g00296 1148 Gene3D - 797 1008 IPR013815 GO:0005524
Bda13g00296 1148 Coils Coil 111 138 - -
Bda13g00296 1148 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 859 1146 IPR002192 GO:0005524|GO:0016301|GO:0016310
Bda13g00296 1148 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 857 1146 - -
Bda13g00296 1148 Pfam Starch binding domain 24 101 IPR002044 GO:2001070
Bda13g00296 1148 SUPERFAMILY Starch-binding domain-like 17 109 IPR013784 GO:0030246
Bda13g00296 1148 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 4 1147 - -
Bda13g00296 1148 SMART CBM_20_2 18 107 IPR002044 GO:2001070
Bda13g00296 1148 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 11 111 IPR002044 GO:2001070
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00296 K15535 PWD; phosphoglucan, water dikinase [EC:2.7.9.5] - jre:108987321 1615.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00448 Bda-Chr11:4739234 Bda13g00296 Bda-Chr13:3689299 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0897 . . . . . Blo02g00408 Blo07g00074 . Bda13g00296 . Bpe13g00749 Bma02g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004547 2 0 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 3 3 1 42