Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00303 ATGGAAAAGGAGTTCTTCTTCAACGAAGGAGATTACACTTCCGCTCCCCAAACGCAACTTGGGAGCTGTATTTACAACCAGAATTGGGAAATTTCGATGGATCAGAGCGATCCCTTTGAGTCTGCTTTGAGCTCGATTGTATCTTCTCCGGTAGCCTCCTCCCCTATAAACGGCGGCCGAGGAGAAAATTTCATGATCAGAGAACTCATAGGAAGGCTAGGAAGCATCTGCAATTCCGGCGAGATTTCGCCGCACTCTTATATAGGAGGAAGTACTAATACTTCGTGTTACAATACTCCATTAAATTCCCCTCCGAAGCTTAATCTATCAATGGCTGATCCGCAGGTCAGAGCGAATTTCCAGTTTTCAGGTCATCATTTGCCTTCCCATCCAACCATTTCTCCATTTTCAGCGAACCCTGGGTTTGCAGAGAGAGCTGCGAGGTTTTCATATTTTAACAACACAGACAGCTCAAATGGGCAAATTGTCTTGAATGAAGCAGAAATGGCGGTTCGATCAATTTCTAGAGTTGATTCAGGCAAGTTCTCTAGAGTTTTGGGTAATCCATCGAAATCAGGAGGTCAAGAAGGGAGAGATGGGAAGTCGATTCTCGAGAAGTTCAACTGGTTTTCAACATCTTCAGCTGCAGAAAATGCAGAATTAGGGGGCAGGGAAGGATCTACACTCACCGAGCAGAACCCAGGTGGGAAACTGAGAGTAAGAATCAAAGGAGAAAACAATTCAAGAAAAAGAAAATCAATTCCAAAAGGAGAAGCAAAAGAAGCCAAGAATTCAATGATTTTTATCTCAGTATATTCAATCATAAGATCTGTAACTTACTTGGAACTATCTTTCTCTGTTCATCAGAGAAATGGACAGAATGAAGCTTCTGGAAATGAGAAGGATGCTTCAGAGGTAAAGGCAGAACCCAGTGGAGATATAAAAGAGGAAGAAGATGGGAATCAGAAGACAAAGCCTTCAGAACCTCCAAAAGATTACATCCATGTCAGAGCTAGAAGGGGTCAGGCCACTGATAGCCACAGCCTGGCTGAAAGAGTCAGAAGAGAGAAAATAAGCCAGAGAATGAAGTTCCTCCAGGATCTTGTTCCCGGCTGCAATAAGGTAACAGGGAAAGCAGTGATGCTCGATGAAATCATAACCTATGTCCAGTCGTTGCAGCGCCAAGTAGAATTTCTTTCTATGAAATTAGCTACTATTAGTCCAAGGATGGATGCAACAATGGAGGGTCTCCTTCCGCCGTTTTCGTCTGGTTATCAATCTCTTCAATTGCAGACCATTCATGGCGGTGTTTCTTCCGGGACAGAGTTGAATCTTCCGATGAACAATCTGGGTGGTGGATATGGGGAATCTTCACGCCAAGTAATTGAAGACAACTAA 1398 43.56 MEKEFFFNEGDYTSAPQTQLGSCIYNQNWEISMDQSDPFESALSSIVSSPVASSPINGGRGENFMIRELIGRLGSICNSGEISPHSYIGGSTNTSCYNTPLNSPPKLNLSMADPQVRANFQFSGHHLPSHPTISPFSANPGFAERAARFSYFNNTDSSNGQIVLNEAEMAVRSISRVDSGKFSRVLGNPSKSGGQEGRDGKSILEKFNWFSTSSAAENAELGGREGSTLTEQNPGGKLRVRIKGENNSRKRKSIPKGEAKEAKNSMIFISVYSIIRSVTYLELSFSVHQRNGQNEASGNEKDASEVKAEPSGDIKEEEDGNQKTKPSEPPKDYIHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVTGKAVMLDEIITYVQSLQRQVEFLSMKLATISPRMDATMEGLLPPFSSGYQSLQLQTIHGGVSSGTELNLPMNNLGGGYGESSRQVIEDN 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3849368 3850925 + Bda001192.1 Bda13g00303 18434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00303 465 MobiDBLite consensus disorder prediction 292 333 - -
Bda13g00303 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 410 IPR036638 GO:0046983
Bda13g00303 465 Pfam Helix-loop-helix DNA-binding domain 346 393 IPR011598 GO:0046983
Bda13g00303 465 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 30 420 - -
Bda13g00303 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Bda13g00303 465 MobiDBLite consensus disorder prediction 218 260 - -
Bda13g00303 465 Gene3D - 339 413 IPR036638 GO:0046983
Bda13g00303 465 MobiDBLite consensus disorder prediction 300 333 - -
Bda13g00303 465 SMART finulus 348 398 IPR011598 GO:0046983
Bda13g00303 465 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 30 420 IPR024097 GO:0006355
Bda13g00303 465 CDD bHLH_AtBPE_like 332 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00505 Bda-Chr4:53632747 Bda13g00303 Bda-Chr13:3849368 3.19E-52 dispersed
Bda08g00061 Bda-Chr8:491731 Bda13g00303 Bda-Chr13:3849368 9.41E-91 dispersed
Bda10g00520 Bda-Chr10:38831959 Bda13g00303 Bda-Chr13:3849368 1.02E-70 dispersed
Bda11g01162 Bda-Chr11:11889411 Bda13g00303 Bda-Chr13:3849368 9.75E-47 dispersed
Bda11g01582 Bda-Chr11:49101555 Bda13g00303 Bda-Chr13:3849368 3.11E-37 dispersed
Bda13g00303 Bda-Chr13:3849368 Bda15g00591 Bda-Chr15:9105510 2.41E-46 dispersed
Bda13g00303 Bda-Chr13:3849368 Bda03g01075 Bda-Chr3:10797734 1.14E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16861 PF00010 HLH 1.40E-05 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00303 - - qsu:112039101 436.417