Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00305 ATGTATGAAATGGCGAGCCCAGATCCTGAAGGAATTGACGGCGTTAGGATGACTTGGAACGCCTGGCCTCGCACCATGGTTGAAGCCAGCAAGTGCGTTATCCCTCTCGCCGCTTCTATATCGCCGATCCGCCACCATCCCGACATTCCGACGCTACCTTACGCGCCTCTCCGATGTAAAACTTGCGCTGCAATCCTCAACCCTTTCTCTCGTGTGGATTTCACTGCTAAGATCTGGATCTGCCCCTTTTGTTACCAGCGGAATCATTTTCCCCCTCACTATGCTATGATCTCCGAGACCAATCTTCCCGGCGAGCTTTATCCGCAGTACACCACAGTCCAATATGCTTTGCCTCAATCAACGAACCCTAATATTGATTCCTCGCAGTCGCATCTCCCGCCCGTGTTCGTTTTCGTACTCGATACTTGCATGATCGAAGAAGAATTTGAGTTTGTGAAATTGGCCTTAAACATGGCGATCGAGCTGCTGCCTGATAATGCCATGGTTGGATTTGTGTCGTTTGGAACTCAGGTTCAAGTTCATGAATTGGGTTTCACTGATATGTCCAAAGTGTATGTTTTCCGAGGTACCAAGGAGATTACTAAGGACCAGGTTTTGGAGCAATTGGGTCTTGGTGTCTCTGGGCGGAAAGCGCCTGGAGCGTACCAAAAGGTGGTGCAGAATGGATTTCCCGATTTGGGTATGACACGCTTTCTGCTGCCTGCTTCAGAGTGCGCATACACCCTTAATTCGCTCTTGGATGAACTGCAAACAGATCAATGGCCTGTTCCTCCTGGTAATCGGGCTTCTCGGTGCACTGGTGTTGCATTGAGCATTGCAGCCAGTTTGGTTGGGGCTTGTTTGCCCGGCACTGGTGCTCGAATTGTGGCTCTAGTTGGTGGTCCATGCACAGAAGGCCCGGGCACGATTGTCTCAAAAGAACTTTCGGATCCGGTGCGTTCTCATAAAGACCTTGATAAGGATGCAGCTCCATTCTATAAAAAAGCAGTCAAGTTTTATGAAAACCTTTCAAAACAGTTGGTTAGCCAAGGCAATGTCCTGGATCTTTTTGCGTCAGCCCTTGATCAGGTCGGGGTTGCAGAGATGAAAGTTGCAGTGGAGAAAACCGGTGGGCTTGTTGTTCTGTCCGAAAGTTTTGGGCATTCGGTATTTAAGGACTCTTTTAAGCGTATATTTGAAGAAGGGGAGCACTCTCTTGGTCTATGTTCTAATGGAACACTTGAGATCAACTGCTCAAAAGACATCAGAATTCAGGGGATCATCGGACCTTGCACGTCTTTGGAAAAGAAAGGTCCTTCTGTCTCTGACACTGTAGTTGGAGAGGGCAATACGACTGCATGGAAGATGTGTGGCCTTGACAAGAGCACTTGCTTGACAGTTTATTTTGATCTTTCGTCAAGTGATAAGTCAAATAATCTAGGAACTGTCAACCCACAGTTGTATTTACAGTTTCTGACAAGTTATCAAAACCCTGAAGGCCAATTCATGGTTCGTGTTACGACTGTCACTAGAAGCTGGATAGATAGTGCTGTAAGCTTTGAGGAACTAGTACAAGGATTTGACCAAGAGACTGCAGCTGTTGTTATGGCAAGATTAACGTCCTTGAAAATGGAGATGGAGGATGAATTTGATGCAGTACGCTGGTTGGACCATTCCCTAATTCGTCTATGTTCCAAATTTGGCGATTACCGGAAGGACGATCCCTCATCCTTTACTTTGAACCCTTGCTTCTCCTTGTTTCCTCAATTTATTTTTAATCTCCGACGTTCGCAATTTGTGCAGGTTTTTAACAATAGTCCTGATGAAACTGCTTATTTCCGCATGGTGTTAAACCGCGAGAACATCACCAATGCTGCTGTGATGATCCAACCATCATTAATATCGTATTCATTCAATTCATTGCCTGCTCCAGCATTGTTGGACGTGGCATCCATCGCAGCTGACCGAATTCTCTTACTGGATTCATATTTTAGTGTTGTCATATTCCATGGAATGACAATAGCTCAGTGGCGGAATATGGGGTACCAAAATCAGCCAGAACATGAGGCATTTGCGCTTCTATTACAAGCTCCTCAGAATGAGGCCCAAATTATCATCAAAGGGCGATTCCCTGCCCCCCGGTTGGTCGTGTGCGACCAGCATGGCTCCCAGGCTAAGATTTTTACTGGCAAAATTGAATCCATCAGCCACATATAA 2217 46.37 MYEMASPDPEGIDGVRMTWNAWPRTMVEASKCVIPLAASISPIRHHPDIPTLPYAPLRCKTCAAILNPFSRVDFTAKIWICPFCYQRNHFPPHYAMISETNLPGELYPQYTTVQYALPQSTNPNIDSSQSHLPPVFVFVLDTCMIEEEFEFVKLALNMAIELLPDNAMVGFVSFGTQVQVHELGFTDMSKVYVFRGTKEITKDQVLEQLGLGVSGRKAPGAYQKVVQNGFPDLGMTRFLLPASECAYTLNSLLDELQTDQWPVPPGNRASRCTGVALSIAASLVGACLPGTGARIVALVGGPCTEGPGTIVSKELSDPVRSHKDLDKDAAPFYKKAVKFYENLSKQLVSQGNVLDLFASALDQVGVAEMKVAVEKTGGLVVLSESFGHSVFKDSFKRIFEEGEHSLGLCSNGTLEINCSKDIRIQGIIGPCTSLEKKGPSVSDTVVGEGNTTAWKMCGLDKSTCLTVYFDLSSSDKSNNLGTVNPQLYLQFLTSYQNPEGQFMVRVTTVTRSWIDSAVSFEELVQGFDQETAAVVMARLTSLKMEMEDEFDAVRWLDHSLIRLCSKFGDYRKDDPSSFTLNPCFSLFPQFIFNLRRSQFVQVFNNSPDETAYFRMVLNRENITNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNMGYQNQPEHEAFALLLQAPQNEAQIIIKGRFPAPRLVVCDQHGSQAKIFTGKIESISHI 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3880998 3886930 + Bda001195.1 Bda13g00305 18436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00305 738 SUPERFAMILY vWA-like 132 400 IPR036465 -
Bda13g00305 738 SUPERFAMILY Helical domain of Sec23/24 528 630 IPR036175 GO:0006886|GO:0006888|GO:0030127
Bda13g00305 738 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bda13g00305 738 Gene3D - 10 511 - -
Bda13g00305 738 Gene3D von Willebrand factor, type A domain 133 408 IPR036465 -
Bda13g00305 738 Pfam Sec23/Sec24 helical domain 528 624 IPR006900 GO:0006886|GO:0006888|GO:0030127
Bda13g00305 738 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 731 IPR037364 -
Bda13g00305 738 Pfam Sec23/Sec24 trunk domain 132 399 IPR006896 GO:0006886|GO:0006888|GO:0030127
Bda13g00305 738 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 631 733 IPR036180 -
Bda13g00305 738 SUPERFAMILY beta-sandwich domain of Sec23/24 8 527 - -
Bda13g00305 738 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 731 - -
Bda13g00305 738 Gene3D Severin 630 734 IPR029006 -
Bda13g00305 738 Gene3D Sec23/Sec24 helical domain 525 629 - -
Bda13g00305 738 Pfam Gelsolin repeat 640 726 IPR007123 -
Bda13g00305 738 SUPERFAMILY Zn-finger domain of Sec23/24 47 119 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bda13g00305 738 Gene3D - 53 112 - -
Bda13g00305 738 Pfam Sec23/Sec24 beta-sandwich domain 410 513 IPR012990 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00305 K14006 SEC23; protein transport protein SEC23 - csv:101209792 1295.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00925 Bda-Chr3:8161961 Bda13g00305 Bda-Chr13:3880998 0 dispersed
Bda07g00685 Bda-Chr7:8102847 Bda13g00305 Bda-Chr13:3880998 6.36E-09 dispersed
Bda07g01654 Bda-Chr7:30781713 Bda13g00305 Bda-Chr13:3880998 5.04E-42 dispersed
Bda11g00438 Bda-Chr11:4648349 Bda13g00305 Bda-Chr13:3880998 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004546 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00305 Bda_Chr13 FPKM 0.0 0.0 0.0 0.0 0.20937 0.15815 0.302582 0.592941 0.315479