Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00306 ATGGAGAATCAAGATCAGAGAAAGACTCATGCTCCGGAGAATCATGGAGGAGTTCACCTTTGCCACAAATGTGGATGGCCCTTTCCTAATCCACATCCTAGTGCTAGACATAGACGAGCACATAAAAGGGTTTGCGGAAAAATCGAAGGTCATAAGCTGATTGATTCAGAAGGGAGCAACCATTCCACACTCTCCGACGATGAGCACGTTTCTGACGACGATAACAAAAACCCTATTGTTGTCGAGACTGTTAAAACCGTGAAGGGTATCGATGAATCGAAGGAAAAATTGAAGAGATCAGAAGAAGATGTGTTTTCCGATGCCGTGGCTGACTTCTCAGAGAGTAAACTTGCCGGAAATACTAAAGATTCAGCATCTATTTCGGAAATTGATACGAAAGAGGAGTTGACTAGTTCACAGAGTTTTAAGGACTGCGAAATTTCTGATCTTGTTCAATTGCCAAGCGCTTTGTCCGACAATATCGTATTGCATAAACCGGAAGTTGGACAGAGTGCAGTTGACGAGTTGGAGGCCGGAGCAGAAAACACACAGAGCCAACAAAGTCCGAATGTTCCAATGGATATTTATATAGACCGAGAAAATATTGATTCCCGAAGTAATGTTGCTGTTGAAACGAACCAGCCAGAGCTGAAAATAGAAGAAATAATCGAGAGAGCTTCAGATCCGATTGCGACCGAGGAAGTTGTTCGACTGAAGGAAGGGCATAGTGCTTGTATCGATCGGGAGATATCACAAGCTGATATGGCCTCCGAAGTCGCTGCAAAATCTTGCAGTTCGGACTATTTGGTTGAAGGCAATGACGGGGGAGGAGAAGAAGATCGGAACAAAAATGTGCATACTGTTTCTGTGCTCGATGACTTAAACATCTCTGACCATTCTGAGGCTTTGCTAAAAGATTTTAAGGACCATAAGGGAGTGAAAGTACAGCAACCCGAAAATACAGACTCGATGAAGGGAATGGAGGAGGGAGAAGATGAATCTTTTCTTTGCAAGCCATTGGATGAAATACCTGTTGGAGAACCAGATGCGACTGAAATGAAGTTCATTGATAGTGATAACCCGAAAGAAGAACAAGAGATCAATCGTATTCCAAAGGGTTCATTTCCTGTGGATTGTACGAGCAACTTTTCAGAAGTCACATCTGTCGTTGAAGATGTTCCCCGTGAAGGATTCGACCTGAGTGACATATGTAAGGAAAATCCCGATACAAAGATTGAAGAAATGAAAGGCCTTGAGGAGGAACATTTGCCAATGGTGGAAGAACTACCCGAAACTGATAGAAAAGACATCGACTGTGTTTCCGAGTCAAGCACAATTGCTATCAACTCAAACGCTCACGATGGGAAGATGGAACCAGAAAATTCGAAACCAATTCTTGGTCCGGTCAATGACGAATCTTTAATTCACAGTTCTGCCACCATGGAGGATAATATTTCAGCAGAGGTTGGAGAAGCAGTTCTTATTTCCGAGCCTTTGCAGGTCGAAGGCAACAATATCATCGACAAACCAGTGGTTACTGGATCTCCGATTGATGTTTTGGCTGACTCGAGTAGCCAAGCAGATAGTGTCGAAGCCACCTGGGGATCCGTATTGTCAGGGCTTTCGATTCGGTCAGATGCACCGGCCATTGTCGAAGAATGTAAGGATATACCACAAACATTTGACCGTGCACCTGCCGGAGTTGAGAAAAGCGACCAGAAAATGCAGAAAGCTGCATCGCAGAATTCTGAAAGATCGGATGCGTTTGAGCCACCATCTTTCATGACCCTAGTCGAACAGGGTGAAGGGGATGGGCCAAACGCGGCGGATTCCAAGAATCCAAACACAAAAGAGCCACAACCCGGATGGTTTCCTTCTTTTACTCCTGTTCCGAGTGATTCGGATGGTAGAAAAAAGAATGAAGAACTTATTGCCAAGGTGACGAACTGGAAGGCCGGAAAGCAACACACCCCACTGAAGAATCTGCTCGGCGAGGCCGCCCTCGAAGCCAAACCGAAGTTGCAAAAGCCAGAAAATATACATCCTCCAGTTCAAAACGATGAAAAAACAGCAAAGAACAATGGTGGGACAATAAACTCCAGTTTGGAGCTGGACTCTCCGACCACCGGGGAGAGTGCGAAGAAAACGAGTGAGAAAGAGTGGGATTCTCCGGCGAGGCTACCAGAGGAGATCAAGAAGGAGAAGAAGAAAGGGAAGGGAAGACCATACTGGGCACAATTTGTATGCTGCACATCTGCAAATTACTAA 2268 45.06 MENQDQRKTHAPENHGGVHLCHKCGWPFPNPHPSARHRRAHKRVCGKIEGHKLIDSEGSNHSTLSDDEHVSDDDNKNPIVVETVKTVKGIDESKEKLKRSEEDVFSDAVADFSESKLAGNTKDSASISEIDTKEELTSSQSFKDCEISDLVQLPSALSDNIVLHKPEVGQSAVDELEAGAENTQSQQSPNVPMDIYIDRENIDSRSNVAVETNQPELKIEEIIERASDPIATEEVVRLKEGHSACIDREISQADMASEVAAKSCSSDYLVEGNDGGGEEDRNKNVHTVSVLDDLNISDHSEALLKDFKDHKGVKVQQPENTDSMKGMEEGEDESFLCKPLDEIPVGEPDATEMKFIDSDNPKEEQEINRIPKGSFPVDCTSNFSEVTSVVEDVPREGFDLSDICKENPDTKIEEMKGLEEEHLPMVEELPETDRKDIDCVSESSTIAINSNAHDGKMEPENSKPILGPVNDESLIHSSATMEDNISAEVGEAVLISEPLQVEGNNIIDKPVVTGSPIDVLADSSSQADSVEATWGSVLSGLSIRSDAPAIVEECKDIPQTFDRAPAGVEKSDQKMQKAASQNSERSDAFEPPSFMTLVEQGEGDGPNAADSKNPNTKEPQPGWFPSFTPVPSDSDGRKKNEELIAKVTNWKAGKQHTPLKNLLGEAALEAKPKLQKPENIHPPVQNDEKTAKNNGGTINSSLELDSPTTGESAKKTSEKEWDSPARLPEEIKKEKKKGKGRPYWAQFVCCTSANY 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3895062 3898171 + Bda001196.1 Bda13g00306 18437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00306 755 MobiDBLite consensus disorder prediction 686 711 - -
Bda13g00306 755 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 435 754 - -
Bda13g00306 755 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 435 754 - -
Bda13g00306 755 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 386 - -
Bda13g00306 755 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 386 - -
Bda13g00306 755 MobiDBLite consensus disorder prediction 712 741 - -
Bda13g00306 755 MobiDBLite consensus disorder prediction 448 470 - -
Bda13g00306 755 MobiDBLite consensus disorder prediction 117 139 - -
Bda13g00306 755 MobiDBLite consensus disorder prediction 574 589 - -
Bda13g00306 755 MobiDBLite consensus disorder prediction 1 23 - -
Bda13g00306 755 MobiDBLite consensus disorder prediction 561 641 - -
Bda13g00306 755 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Bda13g00306 755 MobiDBLite consensus disorder prediction 664 741 - -
Bda13g00306 755 MobiDBLite consensus disorder prediction 1 17 - -
Bda13g00306 755 MobiDBLite consensus disorder prediction 51 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00306 - - - palz:118043761 346.665
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01133 Bda13g00306 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g988 . Blo12g00109 Bda03g01133 . Bpe04g01076 . Bma04g01169 . Cmo08g00975 Cmo17g00088 . . . . . . . . . . . . . . Cla06g00783 Cam06g0836 Cec06g0851 Cco06g0861 Clacu06g0840 Cmu06g0811 Cre06g1592 . . . . . Csa02g00899 . . . . . Bda13g00306 . . . . Sed09g0166 . . Cma08g01002 Cma17g00081 Car08g00884 Car17g00076 Cpe12g00075 Cpe17g00269 Bhi12g01468 Tan06g2267 Cmetu05g1273 . . . . . . . . . . . Lsi09g01115 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003388 1 1 0 3 0 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 11 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00306 Bda_Chr13 FPKM 126.556496 130.688751 84.188423 87.429695 147.24263 129.632919 143.695724 89.165062 87.219521