Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda13g00315 | ATGGCTTTAATTGTGGATCAACAACCACCCTTCAAGCATTTTTGTAAAATATGCAAGAAAGGATTTGTATGCGGTAGAGCTCTAGGAGGGCACATGAGGGCTCATGGCATTGGCGACGAGATCAGCCACATCGACGATGATGACGATCTTGCCGGAGAATGGGACGAGAAAATTCCGGGGAATGTGGTTCCTTCGATCAACAAACGGCCAATGTACGCTCTCCGAACAAACCCTAATCGCCTCAAAACTTGTAGGGTTTGCGAGAATTGTGGCAAAGAATTCTTGTCGTGGAAATCTTTCCTCGAACACGGAAAGTGCACCTCTGATGATGCCGACTCTCTCGTTTCATCCCCTCACTCCGACGGCGACATCGACGGCCGGCAAGGAAATGGATGGTTCAAAAGAAAGCGATCACTCCGAGTAAAGGTTGACAATTTCAACCCTAATTGCCCATCGAGCGAAGAAGAAGACCTAGCGAATTGCTTGATGATGTTGTCGAATGCGAACCCAGCCGATCATTTTTCGGGGGAGCAGGAAGAGTCGTGTGCATCTGCAAGCAAAGAAGAAGATCGGAGAAATTCGATGAATGACCGGAGAAACCCGATGAATTATCTCACTCAGATTTCATCCAAAATTCCTCAGGAAACCAATAAGTCCAAATCAGTTGCTTCAAAGGGAATTTTCGAGTGCAAAGCTTGTAGAAAAGTGTTCAATTCTCACCAAGCTTTAGGTGGCCATAGAGCTAGCCACAAGAAGGTTAAAGGCTGTTTTGCTGCCAAGCTAGATCAAATAGAAGATAGCCAAGAAAACGACGACGTTATAACCCACGAAGATCATCACTTCATCTTCTCAACTAAAGCAAGCTCCACCTTACAGTTCTACAATGGCGGAACTTCTAACAGTAATCCTCCAGTAATGGCTTCCTCTTCTAAGAAAAGATCGAAAATCCACGAGTGCTCCATCTGTCACCGGATTTTCACTTCCGGGCAAGCTTTAGGCGGCCATAAACGCTGCCACTGGATAACCTCCACCGCACCGGAAAATCCAACGTTAGCGAAAACCCACAATTTGCAAGATCAAATGGAACCAATAAACAGCACCCACAATGCGGCAGGTCCGCTTGATCTGAAGCTCGATCTGAACCTTCCAGCCCCAAGGGACGACCGAGTTTCCAATCCTGCTAACTTAAAAGTATCTGCATCGATCTATCTACAGTCGTGGATAAATGGAAAGGAAAAGGAAGAAGATGACATTCAGTACCATCACTGTCATCTCCACCAGACTAACGAGGATGAAAAGAACGAGAACGATAATGGCGATGGGGTGATTCAGAAAGTAGACGACGAAGCAGAGAGTAAAGTGAAGTTAGCAAAGCTCAGTGAGCTTAAGGACATGAACATCAATGGTGGTTCTTCGCCATGGTTGCAGATGGGAATTGGTTCAACCACTGACGTGGGAGCTAACCCTTGA | 1470 | 46.19 | MALIVDQQPPFKHFCKICKKGFVCGRALGGHMRAHGIGDEISHIDDDDDLAGEWDEKIPGNVVPSINKRPMYALRTNPNRLKTCRVCENCGKEFLSWKSFLEHGKCTSDDADSLVSSPHSDGDIDGRQGNGWFKRKRSLRVKVDNFNPNCPSSEEEDLANCLMMLSNANPADHFSGEQEESCASASKEEDRRNSMNDRRNPMNYLTQISSKIPQETNKSKSVASKGIFECKACRKVFNSHQALGGHRASHKKVKGCFAAKLDQIEDSQENDDVITHEDHHFIFSTKASSTLQFYNGGTSNSNPPVMASSSKKRSKIHECSICHRIFTSGQALGGHKRCHWITSTAPENPTLAKTHNLQDQMEPINSTHNAAGPLDLKLDLNLPAPRDDRVSNPANLKVSASIYLQSWINGKEKEEDDIQYHHCHLHQTNEDEKNENDNGDGVIQKVDDEAESKVKLAKLSELKDMNINGGSSPWLQMGIGSTTDVGANP | 489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 4020064 | 4021533 | - | Bda001208.1 | Bda13g00315 | 18446 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda13g00315 | 489 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 15 | 35 | IPR013087 | - | |
| Bda13g00315 | 489 | PANTHER | OS02G0659100 PROTEIN | 1 | 486 | - | - | |
| Bda13g00315 | 489 | PANTHER | OS02G0659100 PROTEIN | 1 | 486 | - | - | |
| Bda13g00315 | 489 | SUPERFAMILY | beta-beta-alpha zinc fingers | 227 | 339 | IPR036236 | - | |
| Bda13g00315 | 489 | MobiDBLite | consensus disorder prediction | 470 | 489 | - | - | |
| Bda13g00315 | 489 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 317 | 339 | IPR013087 | - | |
| Bda13g00315 | 489 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 230 | 250 | IPR013087 | - | |
| Bda13g00315 | 489 | MobiDBLite | consensus disorder prediction | 173 | 200 | - | - | |
| Bda13g00315 | 489 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 319 | 339 | IPR013087 | - | |
| Bda13g00315 | 489 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 228 | 255 | IPR013087 | - | |
| Bda13g00315 | 489 | MobiDBLite | consensus disorder prediction | 182 | 197 | - | - | |
| Bda13g00315 | 489 | SMART | c2h2final6 | 317 | 339 | IPR013087 | - | |
| Bda13g00315 | 489 | SMART | c2h2final6 | 13 | 35 | IPR013087 | - | |
| Bda13g00315 | 489 | SMART | c2h2final6 | 228 | 250 | IPR013087 | - | |
| Bda13g00315 | 489 | Pfam | C2H2-type zinc finger | 13 | 35 | - | - | |
| Bda13g00315 | 489 | Pfam | C2H2-type zinc finger | 317 | 341 | - | - | |
| Bda13g00315 | 489 | Pfam | C2H2-type zinc finger | 228 | 252 | - | - | |
| Bda13g00315 | 489 | SUPERFAMILY | beta-beta-alpha zinc fingers | 13 | 104 | IPR036236 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda11g00425 | Bda13g00315 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00586 | Bda-Chr1:32871523 | Bda13g00315 | Bda-Chr13:4020064 | 1.04E-23 | dispersed | |
| Bda11g01715 | Bda-Chr11:51578710 | Bda13g00315 | Bda-Chr13:4020064 | 3.80E-38 | dispersed | |
| Bda13g00315 | Bda-Chr13:4020064 | Bda13g00614 | Bda-Chr13:7191697 | 2.87E-30 | dispersed | |
| Bda15g00397 | Bda-Chr15:6885882 | Bda13g00315 | Bda-Chr13:4020064 | 7.94E-19 | dispersed | |
| Bda11g00425 | Bda-Chr11:4511861 | Bda13g00315 | Bda-Chr13:4020064 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16863 | PF13912 | zf-C2H2_6 | 7.00E-11 | CL0361 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda13g00315 | - | - | tcc:18614376 | 614.379 |