Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda13g00332 | ATGCGGAGCTCGAGCCCGAATCAGGGTCTTACGGCGGAACCCGTTGATGATTCGCCTTTACTCGGTCATTCCATCGCCGATAACATCCTCCGTAGCCGCCGCTTCATTCGCCACCCACCGCCGCCTCTGCGCGGGGCGGCGAGGTTCCTCCGACGCGCCAGTGGGCGGCGTATGATGCTCCGGGAGCCCTCCGTTTTGGTCCGCGAGACGGCGGCGGAGCAGCTCGAGGAGCGGCAAAGCGACTGGGCCTACTCGAAACCCATCATTGTTTTGGATATTCTATGGAATTTAGCCTTCGCCGGCGTCGGGTTTACGGTTTTGTCTCTTAGCCTGAATGAAAACCCTTCTGTTCCGTTGAGGCTATGGATTATTGGGTATGCTTTGCAGAGTGTAGTTCACATGGCGTGCGTTCTTGCTGAGTATAGACTACGGAGACGGGCGAGATTGGTGAATTCTAATGGAAGCTGGGAAAGTGGTGCGGATTCGAATTCATTTTCTGGTAGTGATGGGGAGGATTATGCTATGGATGAACAGCAGAATCATGGCGATCCAGGTCTTACAAAGCATATCATGTCTGCAAATACGATGTTTTCGTTCATTTGGTGGATAGTAGGATTCTACTGGGTAACTGCCGGAGGCGAATCTTTGACCAGTGACTCACCTCAGCTCTACTGGTTATGTATTACATTCCTCGCGTTCGATGTGGTGTTCGTTCTTATATGCGTAGCTATTGCTTGTCTTGTCGGTATTGCTGTTTGCTGCTGTCTGCCTTGCATAATTGCTATATTATATGCCGTAACTGATCAGGACGGTGCGACAATGGAAGAAATTGATCAACTACCCAAGTACAAGTTCCACAGGCAAGTTGATCCCGAAAAAGTTGATGGGGAGATTCAAGAATCCATGGGAGGGATAATGACCGAATGTGACTCGGATTCCCCCATTGAACTTCCTCTTTCTCAGGAAGATGCTGAATGTTGTATCTGCCTATGTGCATACGACAACGGAACAGAACTCCGCCAGCTCCCTTGCAATCACCATTTCCACAGCTCGTGCGTGGACAAATGGCTGCACATAAACGCCACCTGCCCCCTCTGCAAGTACAACATTTTGAAGCGAGGCGATCAAAGCAACACCGAACAA | 1143 | 50.57 | MRSSSPNQGLTAEPVDDSPLLGHSIADNILRSRRFIRHPPPPLRGAARFLRRASGRRMMLREPSVLVRETAAEQLEERQSDWAYSKPIIVLDILWNLAFAGVGFTVLSLSLNENPSVPLRLWIIGYALQSVVHMACVLAEYRLRRRARLVNSNGSWESGADSNSFSGSDGEDYAMDEQQNHGDPGLTKHIMSANTMFSFIWWIVGFYWVTAGGESLTSDSPQLYWLCITFLAFDVVFVLICVAIACLVGIAVCCCLPCIIAILYAVTDQDGATMEEIDQLPKYKFHRQVDPEKVDGEIQESMGGIMTECDSDSPIELPLSQEDAECCICLCAYDNGTELRQLPCNHHFHSSCVDKWLHINATCPLCKYNILKRGDQSNTEQ | 381 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 4176181 | 4178782 | - | Bda032849 | Bda13g00332 | 18463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda13g00332 | 381 | CDD | RING-H2_RNF111_like | 325 | 369 | - | - | |
| Bda13g00332 | 381 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 372 | IPR013083 | - | |
| Bda13g00332 | 381 | Pfam | Ring finger domain | 325 | 367 | IPR001841 | - | |
| Bda13g00332 | 381 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 9 | 377 | - | - | |
| Bda13g00332 | 381 | ProSiteProfiles | Zinc finger RING-type profile. | 326 | 367 | IPR001841 | - | |
| Bda13g00332 | 381 | SUPERFAMILY | RING/U-box | 320 | 372 | - | - | |
| Bda13g00332 | 381 | SMART | ring_2 | 326 | 366 | IPR001841 | - | |
| Bda13g00332 | 381 | PANTHER | TARGET OF ERK KINASE MPK-1 | 9 | 377 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00979 | Bda-Chr1:43419273 | Bda13g00332 | Bda-Chr13:4176181 | 2.66E-51 | dispersed | |
| Bda06g00077 | Bda-Chr6:781162 | Bda13g00332 | Bda-Chr13:4176181 | 5.25E-46 | dispersed | |
| Bda10g01198 | Bda-Chr10:45980959 | Bda13g00332 | Bda-Chr13:4176181 | 8.37E-112 | dispersed | |
| Bda11g00732 | Bda-Chr11:7373670 | Bda13g00332 | Bda-Chr13:4176181 | 2.58E-81 | dispersed | |
| Bda11g01290 | Bda-Chr11:13602938 | Bda13g00332 | Bda-Chr13:4176181 | 1.59E-10 | dispersed | |
| Bda13g00332 | Bda-Chr13:4176181 | Bda13g01283 | Bda-Chr13:35146003 | 7.22E-47 | dispersed | |
| Bda13g00332 | Bda-Chr13:4176181 | Bda08g00529 | Bda-Chr8:5286865 | 7.78E-147 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda13g00332 | - | - | qsu:111991620 | 565.844 |