Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00332 ATGCGGAGCTCGAGCCCGAATCAGGGTCTTACGGCGGAACCCGTTGATGATTCGCCTTTACTCGGTCATTCCATCGCCGATAACATCCTCCGTAGCCGCCGCTTCATTCGCCACCCACCGCCGCCTCTGCGCGGGGCGGCGAGGTTCCTCCGACGCGCCAGTGGGCGGCGTATGATGCTCCGGGAGCCCTCCGTTTTGGTCCGCGAGACGGCGGCGGAGCAGCTCGAGGAGCGGCAAAGCGACTGGGCCTACTCGAAACCCATCATTGTTTTGGATATTCTATGGAATTTAGCCTTCGCCGGCGTCGGGTTTACGGTTTTGTCTCTTAGCCTGAATGAAAACCCTTCTGTTCCGTTGAGGCTATGGATTATTGGGTATGCTTTGCAGAGTGTAGTTCACATGGCGTGCGTTCTTGCTGAGTATAGACTACGGAGACGGGCGAGATTGGTGAATTCTAATGGAAGCTGGGAAAGTGGTGCGGATTCGAATTCATTTTCTGGTAGTGATGGGGAGGATTATGCTATGGATGAACAGCAGAATCATGGCGATCCAGGTCTTACAAAGCATATCATGTCTGCAAATACGATGTTTTCGTTCATTTGGTGGATAGTAGGATTCTACTGGGTAACTGCCGGAGGCGAATCTTTGACCAGTGACTCACCTCAGCTCTACTGGTTATGTATTACATTCCTCGCGTTCGATGTGGTGTTCGTTCTTATATGCGTAGCTATTGCTTGTCTTGTCGGTATTGCTGTTTGCTGCTGTCTGCCTTGCATAATTGCTATATTATATGCCGTAACTGATCAGGACGGTGCGACAATGGAAGAAATTGATCAACTACCCAAGTACAAGTTCCACAGGCAAGTTGATCCCGAAAAAGTTGATGGGGAGATTCAAGAATCCATGGGAGGGATAATGACCGAATGTGACTCGGATTCCCCCATTGAACTTCCTCTTTCTCAGGAAGATGCTGAATGTTGTATCTGCCTATGTGCATACGACAACGGAACAGAACTCCGCCAGCTCCCTTGCAATCACCATTTCCACAGCTCGTGCGTGGACAAATGGCTGCACATAAACGCCACCTGCCCCCTCTGCAAGTACAACATTTTGAAGCGAGGCGATCAAAGCAACACCGAACAA 1143 50.57 MRSSSPNQGLTAEPVDDSPLLGHSIADNILRSRRFIRHPPPPLRGAARFLRRASGRRMMLREPSVLVRETAAEQLEERQSDWAYSKPIIVLDILWNLAFAGVGFTVLSLSLNENPSVPLRLWIIGYALQSVVHMACVLAEYRLRRRARLVNSNGSWESGADSNSFSGSDGEDYAMDEQQNHGDPGLTKHIMSANTMFSFIWWIVGFYWVTAGGESLTSDSPQLYWLCITFLAFDVVFVLICVAIACLVGIAVCCCLPCIIAILYAVTDQDGATMEEIDQLPKYKFHRQVDPEKVDGEIQESMGGIMTECDSDSPIELPLSQEDAECCICLCAYDNGTELRQLPCNHHFHSSCVDKWLHINATCPLCKYNILKRGDQSNTEQ 381
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 4176181 4178782 - Bda032849 Bda13g00332 18463
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00332 381 CDD RING-H2_RNF111_like 325 369 - -
Bda13g00332 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 372 IPR013083 -
Bda13g00332 381 Pfam Ring finger domain 325 367 IPR001841 -
Bda13g00332 381 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 377 - -
Bda13g00332 381 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Bda13g00332 381 SUPERFAMILY RING/U-box 320 372 - -
Bda13g00332 381 SMART ring_2 326 366 IPR001841 -
Bda13g00332 381 PANTHER TARGET OF ERK KINASE MPK-1 9 377 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00979 Bda-Chr1:43419273 Bda13g00332 Bda-Chr13:4176181 2.66E-51 dispersed
Bda06g00077 Bda-Chr6:781162 Bda13g00332 Bda-Chr13:4176181 5.25E-46 dispersed
Bda10g01198 Bda-Chr10:45980959 Bda13g00332 Bda-Chr13:4176181 8.37E-112 dispersed
Bda11g00732 Bda-Chr11:7373670 Bda13g00332 Bda-Chr13:4176181 2.58E-81 dispersed
Bda11g01290 Bda-Chr11:13602938 Bda13g00332 Bda-Chr13:4176181 1.59E-10 dispersed
Bda13g00332 Bda-Chr13:4176181 Bda13g01283 Bda-Chr13:35146003 7.22E-47 dispersed
Bda13g00332 Bda-Chr13:4176181 Bda08g00529 Bda-Chr8:5286865 7.78E-147 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00332 - - qsu:111991620 565.844