Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00333 ATGAGTTTTGGGGGTTTCCTCGATAATCCTCACGGTTCTGGTGGCGGTGGTGCAAGAATCGTCGCCGATTTGCCTTTTGCCACCAGCAACGGCGAAACAGCCATTAATATGGCATCAACCACAATTGCTCAGCCTCGCCTTCTTTCTCAGACTCTAACGAAATCCATTTTCAACTCTCCTGGCCTCTCTTTAGCTCTTACTGACATTGATGGGCAAGGAGATATGGCTGCTAGATTGGCTGAGACTTTAGAGCCCAATCTTGGCAGAAGAAGCAGAGATGAAGAGCACGAGAGCAGATCTGGCAGCGATAACGTCGATGGTGGTTCCGGCGACGATCTAGACGCCGCCGATATTCGGCCGAGGAAGAAGAGATATCACCGACACACTCCTCAGCAAATCCAAGAACTTGAAGCTCTGTTTAAGGAGTGCCCTCATCCTGATGAGAAACAAAGACTGGAGCTCAGTAAAAGGCTTTCATTGGAAACCAGACAGGTCAAGTTCTGGTTTCAGAATCGTCGAACGCAAATGAAGACTCAATTGGAACGCCATGAAAACACCTTGTTGAGGCAGGAAAACGATAAGCTGAGAGCGGAAAACATGTCCATCCGAGATGCCATGAGAAATCCGATGTGCTCGAACTGTGGCGGCCCCGCAATAATCGGGGAAATCTCGCTGGAAGAGCAGCATCTGAGGATTGAGAATGCACGATTGAAGGACGAGCTAGACCGTGTCTGTGCACTCGCTGGAAAGTTTCTGGGTCGTCCCATTTCGTCTCTGACTTCTCCCATTGCACCTCCATTGCCAAGCTCAAGCTTAGAGCTCGGAGTCGGGAGCAATATTGGTTATGGTGGCTTGAGCAGTGTGTCTACGACCATGGCTATGGGGCAAGAATTTGGAGGTGGGATTTCCAGCAATTTACCAATCATGCCTCCGAGAACATCTGGCGGTTTAATTGGGCTCGACAGGTCCATCGAGAGGTCCATGTTTCTCGAGCTCACGTTGGCTGCCATGGACGAACTGGTTAAGATGGCACAAACCGATGAGCCTCTCTGGATTAGAAGCTCGGAAGGCGGAAGAGAATTGTTGTTAAACCAAGAAGAGTACATTAGAGCTTTCACTCCTTGCATCGGATTAAAACCGAACGGGTTCGGCACCGAAGCATCAAAAGAAACTGGAATGGTTCTAATCAACAGCTTGGGTCTTGTTGAGACAATGATGGATTCAGCTCGATGGGCGGAGATGTTTCCATGTATGATTGCAAGAACATCGACAATCGATGTCATTTCGAGTGGTATGGGCGGAACAAGAAATGGTGCCCTTCAATTGATGCACGCAGAGCTGCAAGTTCTATCGCCATTGGTTCCAGTAAGGGAGGTAAACTTCATTCGCTTCTGCAAGCAGCTTGCAGAAGGAGTATGGGCAGTGGTCGACGTCTCCATTGACAGCCTGAGAGAAGCTCCTGCATTCTACAACTGCCGAAGGCTTCCTTCCGGCTTCATTGTTCAAGATATGCCAAATGGGTGTTCCAAGGTTACGTGGGTGGAGCATGCAGAATACGATGAAAGCCAAGTTCACCAACTCTACCGCCCCCTTCTTTGCTCAGGCATGGCCTTCGGCGCACGGCGGTGGGTGGCCACTCTCCAGCGACAGTGCGAGTGTCTTGACATTCTCATCTCCTCCGCCAATCCCTCTCGCGATCACGCTGCGATTACTTCCGGTGGGCGGAGAAGCATGCTGAAGCTGGCGCAGAGAATGACGGACAACTTCTGCGCCGGAGTTTGTGCTTCGACGGTGCACAAGTGGAACAAACTCAATGCAGGAAATGTGGACGAGGACGTTCGGGTGATGACCCGGAAGAGCGTGGATGATCCGGGAGAGCCGCCGGGGGTTGTGCTTAGCGCTGCCACCTCCGTCTGGCTCCCCGTTTCTCCTCAGAGACTGTTTGACTTTCTGCGCGATGAACGGCTGAGGAGTGAGTGGGATATTTTATCTAACGGTGGTCCGATGCAAGAGATGGCTCACATTGCCAAAGGCCAAGATCACGGCAACTGCGTATCTCTCCTCCGAGCCAGCGCTATGAACGCGAACCAGAGCAGTATGCTGATCCTGCAGGAGACTTGCATAGATGCGGCTGGATCGCTGGTGGTGTACGCGCCGGTGGACATACCGGCAATGCACGTGGTGATGAACGGCGGAGATTCTGCTTACGTGGCTCTACTCCCGTCTGGATTTGCAATCGTCCCCGATGGGCCGGGCACCCGCGGTGGTTCCACTACCGTCGGTAGTCCCAATGGCGGAGAGGGCCCACGCAGAGTGAGTGGGTCTCTCCTGACGGTGGCATTCCAGATTCTCGTGAACAGCTTGCCTACGGACAAGCTCACGGTAGAATCGGTGGAGACGGTGAACAATTTAATCTTCTGCACCGTTCAGAAGATCAAGGCCGCTCTTCAATGCGAAAGCTGA 2463 52.29 MSFGGFLDNPHGSGGGGARIVADLPFATSNGETAINMASTTIAQPRLLSQTLTKSIFNSPGLSLALTDIDGQGDMAARLAETLEPNLGRRSRDEEHESRSGSDNVDGGSGDDLDAADIRPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSPIAPPLPSSSLELGVGSNIGYGGLSSVSTTMAMGQEFGGGISSNLPIMPPRTSGGLIGLDRSIERSMFLELTLAAMDELVKMAQTDEPLWIRSSEGGRELLLNQEEYIRAFTPCIGLKPNGFGTEASKETGMVLINSLGLVETMMDSARWAEMFPCMIARTSTIDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFIRFCKQLAEGVWAVVDVSIDSLREAPAFYNCRRLPSGFIVQDMPNGCSKVTWVEHAEYDESQVHQLYRPLLCSGMAFGARRWVATLQRQCECLDILISSANPSRDHAAITSGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGTRGGSTTVGSPNGGEGPRRVSGSLLTVAFQILVNSLPTDKLTVESVETVNNLIFCTVQKIKAALQCES 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4230213 4234893 - Bda001224.1 Bda13g00333 18464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00333 820 SUPERFAMILY Bet v1-like 324 553 - -
Bda13g00333 820 Coils Coil 173 205 - -
Bda13g00333 820 SMART HOX_1 120 183 IPR001356 GO:0003677
Bda13g00333 820 ProSiteProfiles START domain profile. 322 556 IPR002913 GO:0008289
Bda13g00333 820 SUPERFAMILY Bet v1-like 574 792 - -
Bda13g00333 820 CDD START_ArGLABRA2_like 326 552 - -
Bda13g00333 820 Pfam START domain 332 553 IPR002913 GO:0008289
Bda13g00333 820 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Bda13g00333 820 MobiDBLite consensus disorder prediction 85 102 - -
Bda13g00333 820 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 817 IPR042160 -
Bda13g00333 820 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 67 817 - -
Bda13g00333 820 SUPERFAMILY Homeodomain-like 107 179 IPR009057 -
Bda13g00333 820 SMART START_1 331 553 IPR002913 GO:0008289
Bda13g00333 820 CDD homeodomain 121 179 IPR001356 GO:0003677
Bda13g00333 820 Gene3D - 112 195 - -
Bda13g00333 820 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Bda13g00333 820 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Bda13g00333 820 MobiDBLite consensus disorder prediction 83 127 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00354 Bda13g00333 CCT
Bda08g00354 Bda13g00333 ECH
Bda11g00288 Bda13g00333 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01106 Bda-Chr1:45888152 Bda13g00333 Bda-Chr13:4230213 3.52E-176 dispersed
Bda05g00570 Bda-Chr5:53579833 Bda13g00333 Bda-Chr13:4230213 0 dispersed
Bda08g00354 Bda-Chr8:3621138 Bda13g00333 Bda-Chr13:4230213 1.91E-44 dispersed
Bda09g00755 Bda-Chr9:13423733 Bda13g00333 Bda-Chr13:4230213 0 dispersed
Bda11g00288 Bda-Chr11:3291076 Bda13g00333 Bda-Chr13:4230213 0 dispersed
Bda13g00333 Bda-Chr13:4230213 Bda13g00620 Bda-Chr13:7230664 0 dispersed
Bda13g00333 Bda-Chr13:4230213 Bda14g00713 Bda-Chr14:5378449 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16866 PF01852 START 2.00E-52 CL0209 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00333 K09338 - qsu:111991611 1307.74