Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00357 TCCGCCATGGAAGACGATTGGGATCTTCACGCCGTCGTCAGAGGCTGTAACGCCTCAACCATGACATCTATTTCTTCTTCTACTTCTTCTTCTTCCTCTATATCGACTTCCTCTGCCCCGTTGACTTCTCAAGCTTTTGTATTAGATTCTCCTAGCTCTTGCTTTTCCATTTTTAGTGGAGATAAAAATGGCCAGTTTTTCTCTACCCAAGATCCATTTGAAGGAAGAAATAATGACGAAGAGTTGCATGAGCTTTACAAGCCTTTCTTCCCCAAGTCTCCAGCGTCTGGGCACCCTCGGCCACTTTCTTCGGCGGTGACGGGAGTCTCTCCGTTTTCTCTCCCTTCAGCGTCGAAAGCTCGAACCCACCAAAAGCAGAGTCATGGAGGGTCTGTGACCACCCCTCGAACTAAAAGAAGAAAGAATCAGATGAAGAAAGTTTGCCAAGTTGCATCAGAGAGTCTTTCTTCAGATATATGGGCATGGCGTAAATATGGACAGAAGCCCATTAAAGGTTCTCCATATCCGAGGGGGTATTACAGATGTAGCAGCTCAAAGGGTTGTTTAGCCCGGAAACTAGTGGAGCGGAACAGATCCGACCCGGGAATGTTCATCGTCACCTACACTGCGGAACATAACCACCCTGCTCCGACGCACCGAAACTCGCTCGCCGGTTCTACGCGTCAGAAGCCTGGATCATCACCCGAACCGAATAAAATCGAATCTGGAGTACCCGATTTCTCCTTATCGCCGTCTTCAGAAGACGGTGCCGCACCTCCGAGTACCACCGCGGAAAGCAAGGAAGAAAATGGGGATTTGGTGGAAAACGATGAAGACGATTTCGGGGTCTCGAAGATGGTCTTTGAGGACGATTTCGTTGTGCGCTTCAGGGAACTCGACAGCCCGGCAACCGGTGACCGTTTATACGATGACTTTCCGGCCAACTTTGGCTCACCCTGGACTGGATGGTCACAAAATACCGTGATGTAG 990 49.6 SAMEDDWDLHAVVRGCNASTMTSISSSTSSSSSISTSSAPLTSQAFVLDSPSSCFSIFSGDKNGQFFSTQDPFEGRNNDEELHELYKPFFPKSPASGHPRPLSSAVTGVSPFSLPSASKARTHQKQSHGGSVTTPRTKRRKNQMKKVCQVASESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKLVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPGSSPEPNKIESGVPDFSLSPSSEDGAAPPSTTAESKEENGDLVENDEDDFGVSKMVFEDDFVVRFRELDSPATGDRLYDDFPANFGSPWTGWSQNTVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4459365 4460649 + Bda001248.1 Bda13g00357 18488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00357 329 MobiDBLite consensus disorder prediction 106 133 - -
Bda13g00357 329 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda13g00357 329 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 301 IPR044810 GO:0003700
Bda13g00357 329 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda13g00357 329 SUPERFAMILY WRKY DNA-binding domain 152 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda13g00357 329 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda13g00357 329 MobiDBLite consensus disorder prediction 88 147 - -
Bda13g00357 329 MobiDBLite consensus disorder prediction 245 267 - -
Bda13g00357 329 Gene3D WRKY domain 140 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda13g00357 329 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 301 - -
Bda13g00357 329 MobiDBLite consensus disorder prediction 211 282 - -
Bda13g00357 329 MobiDBLite consensus disorder prediction 214 236 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00997 Bda13g00357 CCT
Bda03g00997 Bda13g00357 ECH
Bda11g00236 Bda13g00357 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00486 Bda-Chr2:45736800 Bda13g00357 Bda-Chr13:4459365 6.45E-42 dispersed
Bda03g00997 Bda-Chr3:9079697 Bda13g00357 Bda-Chr13:4459365 3.88E-84 dispersed
Bda07g01904 Bda-Chr7:36452845 Bda13g00357 Bda-Chr13:4459365 3.17E-55 dispersed
Bda07g01906 Bda-Chr7:36505363 Bda13g00357 Bda-Chr13:4459365 1.27E-54 dispersed
Bda13g00357 Bda-Chr13:4459365 Bda14g00771 Bda-Chr14:5895742 5.26E-30 dispersed
Bda11g00236 Bda-Chr11:2806716 Bda13g00357 Bda-Chr13:4459365 1.24E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16868 PF03106 WRKY 5.10E-24 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00357 K13425 - csv:101217082 329.717