Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00400 GCTGTTATCGTTGCAGAAATGGCTTCAGATCCTCAAGTTTATACTTTTGGTGAAGTGGCCAAGCATAATCATAAGAAGGATTGCTGGCTTATCATCTCTGGAAAGGTGTATGATGTGACCCCGTTTCTCGACGAACATCCAGGAGGTGATGAAGTCTTGGTTTTAGCCGCAGAGAAAGATGCGACGGATGATTTCGAAGATGTTGGGCACAGCGATTCGGCTCGAGAGATGATGGAGAAATACTACGTGGGGGAGTTGGACGAGTCTAGTCTTCCGAAGAAACCGAATTTCATCCCGCCTTCGACTGCTCAAGCAGCTCAAACCGTCCACCCATCTTCTGGAGCTTTCCGGGTGAGAATGTTTCAAATTCTGACCTTCATTGTGGTGTTGGGACTGGCTTTCGCTCTGCAATATTTTGGCAAGAAAGAATGA 432 46.99 AVIVAEMASDPQVYTFGEVAKHNHKKDCWLIISGKVYDVTPFLDEHPGGDEVLVLAAEKDATDDFEDVGHSDSAREMMEKYYVGELDESSLPKKPNFIPPSTAQAAQTVHPSSGAFRVRMFQILTFIVVLGLAFALQYFGKKE 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4962212 4963506 + Bda001301.1 Bda13g00400 18531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00400 143 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 11 87 IPR001199 -
Bda13g00400 143 PANTHER - 7 141 - -
Bda13g00400 143 Pfam Cytochrome b5-like Heme/Steroid binding domain 18 86 IPR001199 -
Bda13g00400 143 PANTHER CYTOCHROME B5 7 141 - -
Bda13g00400 143 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 42 49 IPR018506 GO:0020037
Bda13g00400 143 Gene3D - 5 92 IPR036400 -
Bda13g00400 143 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 9 100 IPR036400 -
Bda13g00400 143 PRINTS Cytochrome B5 signature 46 60 IPR001199 -
Bda13g00400 143 PRINTS Cytochrome B5 signature 61 68 IPR001199 -
Bda13g00400 143 PRINTS Cytochrome B5 signature 74 86 IPR001199 -
Bda13g00400 143 PRINTS Cytochrome B5 signature 36 46 IPR001199 -
Bda13g00400 143 SMART Cyt_b5_2 14 87 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00400 K23490 CYB5; cytochrome b5 - zju:107423685 192.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00353 Bda-Chr11:3925250 Bda13g00400 Bda-Chr13:4962212 1.29E-50 dispersed
Bda13g00400 Bda-Chr13:4962212 Bda13g00491 Bda-Chr13:5773805 3.09E-51 dispersed
Bda13g00400 Bda-Chr13:4962212 Bda08g00091 Bda-Chr8:825471 9.57E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g01952 . 1 134 NADPH P450 reductases AT5G53560 81.3 5.4e-61 230.3
Bda11g00353 . 4 137 NADPH P450 reductases AT5G53560 70.1 5.4e-53 203.8
Bda13g00491 . 1 134 NADPH P450 reductases AT5G53560 68.7 7.9e-52 199.9
Bda13g00400 . 7 143 NADPH P450 reductases AT5G53560 54.0 5.8e-39 157.1
Bda11g00353 . 4 137 NADPH P450 reductases AT5G48810 64.0 7.7e-50 193.4
Bda13g00491 . 1 134 NADPH P450 reductases AT5G48810 62.5 3.8e-49 191.0
Bda07g01952 . 1 134 NADPH P450 reductases AT5G48810 60.3 2.0e-45 178.7
Bda05g00891 . 1 139 NADPH P450 reductases AT5G48810 56.1 1.7e-41 165.6
Bda13g00491 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.6e-50 193.0
Bda11g00353 . 25 136 NADPH P450 reductases AT2G32720 80.4 3.7e-49 191.0
Bda07g01952 . 22 133 NADPH P450 reductases AT2G32720 66.1 3.4e-39 157.9
Bda05g00993 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.4
Bda03g01493 BCT 2 253 NADPH P450 reductases AT5G17770 80.2 1.1e-116 416.4
Bda09g01304 . 7 325 NADPH P450 reductases AT5G17770 63.3 5.9e-110 394.0
Bda07g01952 . 1 134 NADPH P450 reductases AT5G53560 81.3 5.4e-61 230.3
Bda11g00353 . 4 137 NADPH P450 reductases AT5G53560 70.1 5.4e-53 203.8
Bda13g00491 . 1 134 NADPH P450 reductases AT5G53560 68.7 7.9e-52 199.9
Bda13g00400 . 7 143 NADPH P450 reductases AT5G53560 54.0 5.8e-39 157.1
Bda11g00353 . 4 137 NADPH P450 reductases AT5G48810 64.0 7.7e-50 193.4
Bda13g00491 . 1 134 NADPH P450 reductases AT5G48810 62.5 3.8e-49 191.0
Bda07g01952 . 1 134 NADPH P450 reductases AT5G48810 60.3 2.0e-45 178.7
Bda05g00891 . 1 139 NADPH P450 reductases AT5G48810 56.1 1.7e-41 165.6
Bda13g00491 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.6e-50 193.0
Bda11g00353 . 25 136 NADPH P450 reductases AT2G32720 80.4 3.7e-49 191.0
Bda07g01952 . 22 133 NADPH P450 reductases AT2G32720 66.1 3.4e-39 157.9
Bda05g00993 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.4
Bda03g01493 BCT 2 253 NADPH P450 reductases AT5G17770 80.2 1.1e-116 416.4
Bda09g01304 . 7 325 NADPH P450 reductases AT5G17770 63.3 5.9e-110 394.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00400 Bda_Chr13 FPKM 37.185131 36.121368 82.111115 80.721916 26.574556 34.162792 27.856356 16.07641 18.63726