Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00406 ACTCCACCGGCTTGGCCTCGGTTCAAAATGACCACCCACTCTCCGGCGACCCGCATGCGTGTAGGAAGATATGAGCTTGGTCGAACTCTGGGCGAGGGCAGCTTTGCTAAAGTCAAGTTCGCCACCAACCTCGACACCTCCCAATGCGTTGCCATCAAGATTCTCGACCGCGACAAAGTCCTCCGCCACAAGATGGTTGAACAGATTAAGACAGAAATATCCACGATGAAGTTGATAAAGCATCCAAATGTAATTCAGATTTATGAGGTCATGGCCAGCAAATCGAAAATCTATATCGTGCTCGAGTTTGTCGATGGTGGTGAGCTTTTCGACAAAATTGCTGCAAATGGGAGATTTAAAGAAGATGAAGCAAGAAAATACTTCCAGCAGCTCATTAATGCCGTAGATTACTGCCATAGCCGGGGCGTGTACCACCGGGATCTGAAGCCAGAAAATCTCTTATTGGATTCATACGGGGTTCTTAAAGTTTCTGATTTTGGATTGAGTGCATTGTCACAGCAGATGAAAGATGATGGTTTGCTTCACACTGCCTGCGGGACCCCAAATTATGTCGCTCCCGAGCAGGTTCTTAATGACAAAGGTTATGATGGAACTGCCTCTGATATTTGGTCTTGTGGGGTCATTCTGTTTGTTCTCATGGCTGGATTCTTGCCCTTTGATGAATCAAATCTTATGGCTTTGTATAGGAAATCCTTGTTCTCATCAGAGGAAGCAAGCATTTATGCATTGATGTTAATGCACAAAACTCAGATCAGCAAGGCTGCCTTTTCTTGTCCCTCGTGGTTTTCGTCAGGCGCGAAGAGACTGATTAAGCGTATTCTCGATCCGAACCCTTGCACGCGGATAACAATACCGGAAATTCTCGAAGATGAATGGTTCAAGAAAGGTTATAAACCTCCTCACTTTGAAAGGGAAAATGATGTAAATCTGGATGATATTGATGCTGTTTTCAATGATTCAAAGGAACATCTCGTGACAGAGAGGAGAGAGAAACCCGTGTCGATGAACGCTTTCGAGCTTATTTCCAGGTCGCCTGGTTTCAGCCTCGATAATTTATTTGAAAAACAAAAGGGTAATGTGAAAAGAGAAACCCGTTTTACATCCCAATCTCCTGCAAATGAAATCGTCTCTAAGATCGAGGAAGCTGCAAAGCCTCTGGGATTCAATGTTCGGAAGAACAATTACAAGATGAAATTGCAGGGGGACAAGACTGGCAGGAAAGGGCACCTCTCTGTTGCCACCGAGGTGTTTGAGGTTGCTCCTTCGTTACACATGGTGGAGCTACGTAAAACGGGCGGCGACACTCTCGAGTTTCACAAGGCATGTATAATCTTTTTTCTTGCCATCCTACAGTTTTACAAAAGCTTCTCATCTGGGTTGAAAGATATAGTGTGGAAGTCAGAAGAACCTACTGAAGAAGTGAGGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGCTGTGTTTGGAGTTGA 1506 44.89 TPPAWPRFKMTTHSPATRMRVGRYELGRTLGEGSFAKVKFATNLDTSQCVAIKILDRDKVLRHKMVEQIKTEISTMKLIKHPNVIQIYEVMASKSKIYIVLEFVDGGELFDKIAANGRFKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSYGVLKVSDFGLSALSQQMKDDGLLHTACGTPNYVAPEQVLNDKGYDGTASDIWSCGVILFVLMAGFLPFDESNLMALYRKSLFSSEEASIYALMLMHKTQISKAAFSCPSWFSSGAKRLIKRILDPNPCTRITIPEILEDEWFKKGYKPPHFERENDVNLDDIDAVFNDSKEHLVTERREKPVSMNAFELISRSPGFSLDNLFEKQKGNVKRETRFTSQSPANEIVSKIEEAAKPLGFNVRKNNYKMKLQGDKTGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKACIIFFLAILQFYKSFSSGLKDIVWKSEEPTEEVRYSLSLSLSLSLSLSCCVWS 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5008980 5012134 + Bda001307.2 Bda13g00406 18537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00406 501 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Bda13g00406 501 ProSiteProfiles NAF domain profile. 337 361 IPR018451 GO:0007165
Bda13g00406 501 CDD CIPK_C 343 469 - -
Bda13g00406 501 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Bda13g00406 501 SUPERFAMILY Protein kinase-like (PK-like) 21 338 IPR011009 -
Bda13g00406 501 PANTHER - 16 475 - -
Bda13g00406 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Bda13g00406 501 Pfam NAF domain 339 399 IPR004041 GO:0007165
Bda13g00406 501 Gene3D Kinase associated domain 1, KA1 336 473 - -
Bda13g00406 501 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 16 475 - -
Bda13g00406 501 ProSiteProfiles Protein kinase domain profile. 24 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00406 501 Pfam Protein kinase domain 24 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00406 501 Gene3D Transferase(Phosphotransferase) domain 1 104 307 - -
Bda13g00406 501 SMART serkin_6 24 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00803 Bda-Chr7:9522295 Bda13g00406 Bda-Chr13:5008980 0 dispersed
Bda09g00480 Bda-Chr9:6292252 Bda13g00406 Bda-Chr13:5008980 0 dispersed
Bda09g00876 Bda-Chr9:22627210 Bda13g00406 Bda-Chr13:5008980 0 dispersed
Bda13g00406 Bda-Chr13:5008980 Bda14g01118 Bda-Chr14:10175510 4.29E-154 dispersed
Bda13g00406 Bda-Chr13:5008980 Bda02g00137 Bda-Chr2:19715219 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70001 PF00069 Pkinase 8.40E-73 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00406 - - twl:119982522 741.88