Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00424 ATGGATCAAGTATCAGCACAGGGCCGTCCAATCCTACCACCTTTTCTCTCTAGGGATCTTCATCTCCACCCTCATCACCAATTCCAGCATCACCAGCAGCAAAACTCTGAAGACGAGCAGAGCGGCAATGGAAGCATAAACCACGGCCCGAAAAGAGAGCGAGATGAAAACAACACCTCCTCTACAACAAAGACCACCACACCGGAGAGCAAAGAGCTCAGCAACAACTTAGGAGGAGATGGAGAAATCACAAGAAGGTCTAGAGGCAGACCGGCTGGTTCAAAAAACAAGCCTAAACCACCGATCATAATCACTAGAGACAGCGCAAACGCCCTCCGATCTCACGTCATGGAAATCACCAACGGCTGTGATATTATGGAGAGTATTTCAACCTTCGCAAGAAAAAGACAGAGAGGGATTTGTATTCTGAGTGGAAGTGGAACAGTAACTAATGTCACTCTGAAACAACCAGCTTCTCCCGGAGCAGTGGTCACTCTACATGGAAGATTTGAGATTCTCTCACTTTCCGGCTCGTTTCTGCCACCTCCGGCGCCGGCTGCAGCTTCCGGGTTGACCATTTACTTGGCTGGTGGACAAGGACAGGTGGTCGGAGGAAGTGTGGCTGGGCCGCTTTTAGCTTCAGGGCCAGTGGTTATCATGGCTGCTTCTTTTGGAAATGCAGCATATGAGAGGCTGCCCATCGATGATGACGAGACTCCGGTGCCGGTTCAGGGAAGTGGACCAGTCGGATCACCGGGAATTCTTGGACAGCAGCAACAACAACTCTTTCCAGATCCCACCTCATCTTTTTTTCATGGAATGCCTCCTAATCTCTTGAATTCATGTCAATTGCCTTCTGAGGGCTATTGGAGCAGTGGTCGTCCTCCTTTTAATTAA 897 49.61 MDQVSAQGRPILPPFLSRDLHLHPHHQFQHHQQQNSEDEQSGNGSINHGPKRERDENNTSSTTKTTTPESKELSNNLGGDGEITRRSRGRPAGSKNKPKPPIIITRDSANALRSHVMEITNGCDIMESISTFARKRQRGICILSGSGTVTNVTLKQPASPGAVVTLHGRFEILSLSGSFLPPPAPAAASGLTIYLAGGQGQVVGGSVAGPLLASGPVVIMAASFGNAAYERLPIDDDETPVPVQGSGPVGSPGILGQQQQQLFPDPTSSFFHGMPPNLLNSCQLPSEGYWSSGRPPFN 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5179679 5180575 - Bda001327.1 Bda13g00424 18555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00424 298 PIRSF ESCAROLA 17 297 IPR014476 GO:0003680
Bda13g00424 298 Gene3D - 112 241 - -
Bda13g00424 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 241 - -
Bda13g00424 298 CDD DUF296 113 224 IPR005175 -
Bda13g00424 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 5 297 - -
Bda13g00424 298 MobiDBLite consensus disorder prediction 1 103 - -
Bda13g00424 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 113 225 IPR005175 -
Bda13g00424 298 ProSiteProfiles PPC domain profile profile. 109 247 IPR005175 -
Bda13g00424 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 297 IPR014476 GO:0003680
Bda13g00424 298 MobiDBLite consensus disorder prediction 60 74 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00910 Bda13g00424 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00901 Bda-Chr3:7859228 Bda13g00424 Bda-Chr13:5179679 1.75E-90 dispersed
Bda03g00910 Bda-Chr3:7975880 Bda13g00424 Bda-Chr13:5179679 1.27E-92 dispersed
Bda09g00069 Bda-Chr9:1361278 Bda13g00424 Bda-Chr13:5179679 8.19E-102 dispersed
Bda13g00424 Bda-Chr13:5179679 Bda15g00342 Bda-Chr15:6271137 1.19E-73 dispersed
Bda13g00424 Bda-Chr13:5179679 Bda07g00512 Bda-Chr7:6538506 6.51E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00424 - - jre:108980480 423.32