Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00435 GGGTTTCCGACGTGGGTTAAGCCAGGTGACCGGAAACTGTTGCAGGCGCCTTCTCCGTCGGTATCTCCAAATATAGTGGTGGCTCAAGATGGGTCTGGAAATTATGACACGATTAGTGCCGCTGTTGGAGCTGCTTCTGACCAGTCGGGTACTGAGAGGTACGTGATTTACGTGAAAGCAGGAACTTATAAAGAGAACATCGAGATAAAAACGACGAACATCATGTTGGTCGGAGATGGAATCGGGAAAACCATCATTACCGGAAGTAAAAGCGTTGGTGGAGGTAGCACAACCTTCCGGTCAGCCACAGTTGCTGTGGTTGGAGATGGTTTTATTGGGCGTGACATCACAATTGTAAACACGGCCGGCCCGGAAAACCACCAAGCAGTAGCTCTCCGGTCAGGCTCGGACTTCTCGGTGTTCTACAAATGCAGTTTTGAAGGCTATCAAGACACCCTTTACGTCCACTCGGAACGACAATTCTATCGAGAATGTGACATTTACGGCACAGTTGATTTCATTTTCGGCAATGCTGCTGTGGTGCTCCAAAACTGTAATATCTCTCCACGCAAACCTCCAAACAAGACCAACACTCTCACTGCTCAAGGCCGAACTGATCAGAACCAGAACACTGGGATTTCGATTATCAATTGTCGAGTCACAGCGTCGGCGGAGTTAGAGCCCGTGGTTAGTACGGTCAAGACATACCTAGGGCGGCCGTGGAAGGAGTATTCTAGAACCGTTTTCATGAAGACATACCTCGATAGCTTGATTAATCCTGCCGGATGGTTGGAGTGGAGTGGCGATTTTGCCTTAAAGACGTTGTATTACGGTGAGTATATGAATAATGGTCCTGGGTCGTCAACTGCCGATCGAGTTAACTGGCCGGGATATCGTGTCATCACAAGTGCTTCAGAAGCTTCGCAATTCACCGTCGAAAACTTCATCGCCGGAAATACTTGGCTTTCAGACACTGATGTTCCGTACACAACTGGCATCTAA 1002 48.5 GFPTWVKPGDRKLLQAPSPSVSPNIVVAQDGSGNYDTISAAVGAASDQSGTERYVIYVKAGTYKENIEIKTTNIMLVGDGIGKTIITGSKSVGGGSTTFRSATVAVVGDGFIGRDITIVNTAGPENHQAVALRSGSDFSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNISPRKPPNKTNTLTAQGRTDQNQNTGISIINCRVTASAELEPVVSTVKTYLGRPWKEYSRTVFMKTYLDSLINPAGWLEWSGDFALKTLYYGEYMNNGPGSSTADRVNWPGYRVITSASEASQFTVENFIAGNTWLSDTDVPYTTGI 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5290181 5291667 + Bda001339.1 Bda13g00435 18566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00435 333 Pfam Pectinesterase 24 319 IPR000070 GO:0030599|GO:0042545
Bda13g00435 333 Gene3D - 18 333 IPR012334 -
Bda13g00435 333 SUPERFAMILY Pectin lyase-like 21 332 IPR011050 -
Bda13g00435 333 PANTHER PECTINESTERASE 2 332 - -
Bda13g00435 333 ProSitePatterns Pectinesterase signature 2. 167 176 IPR033131 -
Bda13g00435 333 ProSitePatterns Pectinesterase signature 1. 50 69 IPR018040 -
Bda13g00435 333 PANTHER PECTINESTERASE 2 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00435 Bda-Chr13:5290181 Bda13g00493 Bda-Chr13:5820585 0 dispersed
Bda13g00433 Bda-Chr13:5277364 Bda13g00435 Bda-Chr13:5290181 2.63E-123 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00435 K01051 - vvi:100255703 557.755