Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00442 ATGGCTGCGAAACAAGGCTTTTGTTCCCTTTCTGGTACTGCTACCCTCATTGGCCTCATACTTATCTCCTTTATCTCTGCTTGTCTCTACGCTCTGGTCATTACTGAGAGGCCAAACACTTTACGGGCTCATATACTAGAGCTCAGCTCCGGCTCAAACGTGGTTGAATCTGTGGCGACTTATGCCCGGAAGAGTCAGAGAGGGATCTGTATATTAAGCGGAAGTGGAACTGTGACTAACGTCAGCGTACGTCAACCCTTTTCAGCCGGAGATTTCGTCGCTTTACACGGCCGGTTCGAGATAATATCTTTAACTGGGTCGTTTTTGCCCCCACCGGCGCCTCCGGATGCTACCAGTTTGACGATATTCTTGTCCGGCGGACAAGGTCAGGTCATTGGTGGTAACGTGGTCGGCGATTTAATAGCCGTCGGTCCCTGTCATCGTTGTCGCTTCATCGTTCGCAAACGTGGCTTACGAGAGATTACCGTTGGACAGACAGGAGCCCATCAAGCAGCCATCGTGGGAAGTCTCTGA 534 51.12 MAAKQGFCSLSGTATLIGLILISFISACLYALVITERPNTLRAHILELSSGSNVVESVATYARKSQRGICILSGSGTVTNVSVRQPFSAGDFVALHGRFEIISLTGSFLPPPAPPDATSLTIFLSGGQGQVIGGNVVGDLIAVGPCHRCRFIVRKRGLREITVGQTGAHQAAIVGSL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5389803 5390336 - Bda001346.1 Bda13g00442 18573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00442 177 Gene3D - 41 170 - -
Bda13g00442 177 Pfam Plants and Prokaryotes Conserved (PCC) domain 42 146 IPR005175 -
Bda13g00442 177 ProSiteProfiles PPC domain profile profile. 38 174 IPR005175 -
Bda13g00442 177 SUPERFAMILY AF0104/ALDC/Ptd012-like 39 146 - -
Bda13g00442 177 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 146 IPR014476 GO:0003680
Bda13g00442 177 CDD DUF296 42 142 IPR005175 -
Bda13g00442 177 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Bda13g00442 177 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 33 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00442 Bda-Chr13:5389803 Bda15g00342 Bda-Chr15:6271137 6.33E-43 dispersed
Bda11g00297 Bda-Chr11:3364528 Bda13g00442 Bda-Chr13:5389803 7.10E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00442 - - gmx:100803960 172.555