Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g00470 | ATGGGTTCTGTAGGAAACTCAAATCCCTGGTTTCAATACCAGTCATACAGAGACTGTTCTCAAGGATTCTGCTCCATATACTGTCCTCAATGGTGCTATATTATCTTCCCTCCTCCTCCACCTTTCGCCATTGGAGACCGCTCCCGCTTAAACTCCTCCCCCTTTGATTTCTCTCCTCTCATAGTAGCAGTCATCGGAATCCTAGCCTCTGCTTTCATTATGATAGGCTACTTCACCTTCATGTCCAAATACTTCCGGCGAACCACCGGCAACAACAACGGGAACGGAGCTGCTGATTCAGATGACCAAATAAGCTCAGAATCATATCAGGCTTCTTCGTCATCGGGCCTGGACGAGGCTCTGATCAAGTCCATAACAGTTTGGAAGTACAAAAAAAATGATGGGTTTGTTGAAGAAACTGATCATTGCTCTGTTTGTCTCTCTGAGTTTCAAGAAAATGAAAGCCTGAGGATTTTGCCGAAATGCAGCCACCCTTTTCACCTACCATGTATAGACACCTGGTTGATGTCTAATTCTAGTTGTCCTCTGTGTCGTTCTACTATCTTACCCACTAATATTTTGCCTATTTCTGCTCAACAAACTCAGCCATCTGGTTTGAATTTGTCTGCACTTGATTCCCAGTCCAGAATCAACAATCAGACTGTTTTAATGGTTCAGAATTTCCAGGAAGCCATTGTTGTTGAAGCTGGAAGTTGTGGCTCTCCTAAGCATAACAGAGGGAGAGTTTCGGCAGAAAGACAGAGCTCAGAGCAAAGAGAAAGCATAATTGAAATTAGAGAAGATGGGTTCCAGTTCCAGCCATTTAGGAGGTCTGTTTCAATGACTTCTTGTTCATATCCAGCCCATGCTTCTGTTGATGACATTTTCAGAGCTACCTACAATGGCGAAAGAGTAGAAGAGGAAGAACGAAGAAACTTACAAATGGGGATTGGGTCCTCAAGGGGAATTGAAAAAGAAGATGGAAGATTTAATAACAGAAGGGGAGATCTAAATTTGGCAATGAAGAGATCTATCTCGGCTGGGAGAATATTGTTTCCTAAGGAATAA | 1068 | 42.98 | MGSVGNSNPWFQYQSYRDCSQGFCSIYCPQWCYIIFPPPPPFAIGDRSRLNSSPFDFSPLIVAVIGILASAFIMIGYFTFMSKYFRRTTGNNNGNGAADSDDQISSESYQASSSSGLDEALIKSITVWKYKKNDGFVEETDHCSVCLSEFQENESLRILPKCSHPFHLPCIDTWLMSNSSCPLCRSTILPTNILPISAQQTQPSGLNLSALDSQSRINNQTVLMVQNFQEAIVVEAGSCGSPKHNRGRVSAERQSSEQRESIIEIREDGFQFQPFRRSVSMTSCSYPAHASVDDIFRATYNGERVEEEERRNLQMGIGSSRGIEKEDGRFNNRRGDLNLAMKRSISAGRILFPKE | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5648394 | 5649461 | + | Bda001375.1 | Bda13g00470 | 18601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g00470 | 355 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 3 | 352 | IPR044675 | - | |
Bda13g00470 | 355 | Pfam | Ring finger domain | 142 | 185 | IPR001841 | - | |
Bda13g00470 | 355 | SUPERFAMILY | RING/U-box | 128 | 191 | - | - | |
Bda13g00470 | 355 | SMART | ring_2 | 143 | 184 | IPR001841 | - | |
Bda13g00470 | 355 | CDD | RING-H2_PA-TM-RING | 142 | 185 | - | - | |
Bda13g00470 | 355 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 185 | IPR001841 | - | |
Bda13g00470 | 355 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 190 | IPR013083 | - | |
Bda13g00470 | 355 | PANTHER | RING-H2 FINGER PROTEIN ATL53-RELATED | 3 | 352 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g00092 | Bda-Chr7:1133298 | Bda13g00470 | Bda-Chr13:5648394 | 9.88E-62 | dispersed | |
Bda12g00717 | Bda-Chr12:34160706 | Bda13g00470 | Bda-Chr13:5648394 | 2.65E-23 | dispersed | |
Bda13g00470 | Bda-Chr13:5648394 | Bda15g00493 | Bda-Chr15:8059195 | 2.69E-34 | dispersed | |
Bda13g00470 | Bda-Chr13:5648394 | Bda12g00528 | Bda-Chr12:8224127 | 7.62E-27 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g00470 | - | - | csv:101222852 | 299.286 |