Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00470 ATGGGTTCTGTAGGAAACTCAAATCCCTGGTTTCAATACCAGTCATACAGAGACTGTTCTCAAGGATTCTGCTCCATATACTGTCCTCAATGGTGCTATATTATCTTCCCTCCTCCTCCACCTTTCGCCATTGGAGACCGCTCCCGCTTAAACTCCTCCCCCTTTGATTTCTCTCCTCTCATAGTAGCAGTCATCGGAATCCTAGCCTCTGCTTTCATTATGATAGGCTACTTCACCTTCATGTCCAAATACTTCCGGCGAACCACCGGCAACAACAACGGGAACGGAGCTGCTGATTCAGATGACCAAATAAGCTCAGAATCATATCAGGCTTCTTCGTCATCGGGCCTGGACGAGGCTCTGATCAAGTCCATAACAGTTTGGAAGTACAAAAAAAATGATGGGTTTGTTGAAGAAACTGATCATTGCTCTGTTTGTCTCTCTGAGTTTCAAGAAAATGAAAGCCTGAGGATTTTGCCGAAATGCAGCCACCCTTTTCACCTACCATGTATAGACACCTGGTTGATGTCTAATTCTAGTTGTCCTCTGTGTCGTTCTACTATCTTACCCACTAATATTTTGCCTATTTCTGCTCAACAAACTCAGCCATCTGGTTTGAATTTGTCTGCACTTGATTCCCAGTCCAGAATCAACAATCAGACTGTTTTAATGGTTCAGAATTTCCAGGAAGCCATTGTTGTTGAAGCTGGAAGTTGTGGCTCTCCTAAGCATAACAGAGGGAGAGTTTCGGCAGAAAGACAGAGCTCAGAGCAAAGAGAAAGCATAATTGAAATTAGAGAAGATGGGTTCCAGTTCCAGCCATTTAGGAGGTCTGTTTCAATGACTTCTTGTTCATATCCAGCCCATGCTTCTGTTGATGACATTTTCAGAGCTACCTACAATGGCGAAAGAGTAGAAGAGGAAGAACGAAGAAACTTACAAATGGGGATTGGGTCCTCAAGGGGAATTGAAAAAGAAGATGGAAGATTTAATAACAGAAGGGGAGATCTAAATTTGGCAATGAAGAGATCTATCTCGGCTGGGAGAATATTGTTTCCTAAGGAATAA 1068 42.98 MGSVGNSNPWFQYQSYRDCSQGFCSIYCPQWCYIIFPPPPPFAIGDRSRLNSSPFDFSPLIVAVIGILASAFIMIGYFTFMSKYFRRTTGNNNGNGAADSDDQISSESYQASSSSGLDEALIKSITVWKYKKNDGFVEETDHCSVCLSEFQENESLRILPKCSHPFHLPCIDTWLMSNSSCPLCRSTILPTNILPISAQQTQPSGLNLSALDSQSRINNQTVLMVQNFQEAIVVEAGSCGSPKHNRGRVSAERQSSEQRESIIEIREDGFQFQPFRRSVSMTSCSYPAHASVDDIFRATYNGERVEEEERRNLQMGIGSSRGIEKEDGRFNNRRGDLNLAMKRSISAGRILFPKE 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5648394 5649461 + Bda001375.1 Bda13g00470 18601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00470 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 352 IPR044675 -
Bda13g00470 355 Pfam Ring finger domain 142 185 IPR001841 -
Bda13g00470 355 SUPERFAMILY RING/U-box 128 191 - -
Bda13g00470 355 SMART ring_2 143 184 IPR001841 -
Bda13g00470 355 CDD RING-H2_PA-TM-RING 142 185 - -
Bda13g00470 355 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Bda13g00470 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 190 IPR013083 -
Bda13g00470 355 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 3 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00092 Bda-Chr7:1133298 Bda13g00470 Bda-Chr13:5648394 9.88E-62 dispersed
Bda12g00717 Bda-Chr12:34160706 Bda13g00470 Bda-Chr13:5648394 2.65E-23 dispersed
Bda13g00470 Bda-Chr13:5648394 Bda15g00493 Bda-Chr15:8059195 2.69E-34 dispersed
Bda13g00470 Bda-Chr13:5648394 Bda12g00528 Bda-Chr12:8224127 7.62E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00470 - - csv:101222852 299.286