Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g00486 | ATGTCGGGCGTTTCTCTGAAGTGCGGTGACTGTGGAGCTCTATTGAGGTCTGTACAAGAAGCTCAAGAGCATGCAGAGCTCACCTCTCACTCCAATTTCTCCGAGTCTGCTGAGGCTGTTCTCAATCTCGTTTGCACCACTTGCGGCAAACCATGCCGTTCCAAAACTGAAACTGACTTGCACACAAAAAGAACTAGCCATGCTGATTTTACTGATAAGACTTCAGAGGTGACGAAACCAATAAATTTAGAGGTCCCCAAGATAGCTGAAGAAGCAGAAGAGGCTGCAAAGACTAGTACTAGTCAGCCTGAAGAAATGGTTGTGCCAGAGGTTGACAAAAAGGTGCTTGAAGAGCTTGAAGCAATGGGTTTCTCAACAGCCCGCGCTACTCGCGCCCTTCATTATTCTGGTAACTCTGGTGTTGAGGCTGCTATTAATTGGGTAGTTGAACATGAAGACGATCCTGACATAGATCAGATGCCTCTGGTACCTTTGAACACAAACGTTGGGGCTCCAAAACCTTCTCTTACTTCGGAAGAAATTAAAATTAAACAACAAGAGCTAAGAGAACGTGCTCGCAAGAAAAAAGAAGAGGAAGAAAAGAAAACAGAAAGAGAAAGGGAAAAGGAAAGAATTCGAGTGGGCAAGGAGCTTTTAGAAGCAAAGAGAATTGAGGAAGAGAATGAACGGAAAAGGATTATGGCTTTGCGAAAAGCTGAAAAGGAGGAAGAGAAAGCAGAAAGAAGAAGGAAGCTTGGATTGGCACCAGAAGATCCTTCTACACTAAAACCTTCTGCATCTGTTGTTGAAGAGAAAAAGAGCATGTTGCCAATTAGGCCTGCCACGAAGGCTGATCAAATTCGAGAATGTTTGCGATCTCTTAAACAGCATCACAAGGCAAGTTCATTCAGACAAGTGAAGCTAGCATTACGGACTCTTCTTACTTATGTGGGGAATGTGGCCCGCAATCCTAGCGAGGAAAAATTCCGAAAGATAAGACTCACAAACCAATCCTTCCAGGAGAGAGTCGGCGGATTGAAAGGCGGTATTGAGTTTCTCGAGCTGTGCGGGTTTGAGAAAATGGAAGGAGATGACTTCTTGTTTCTGGTAAGTGACAAAGTTGATATTGGGGTCTTGAACTCAGCTGGTGCAGAGCTGGACTCTGCTCTGAAGAATCCTTTTTTTGGGGTTCTTTAA | 1197 | 44.36 | MSGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESAEAVLNLVCTTCGKPCRSKTETDLHTKRTSHADFTDKTSEVTKPINLEVPKIAEEAEEAAKTSTSQPEEMVVPEVDKKVLEELEAMGFSTARATRALHYSGNSGVEAAINWVVEHEDDPDIDQMPLVPLNTNVGAPKPSLTSEEIKIKQQELRERARKKKEEEEKKTEREREKERIRVGKELLEAKRIEEENERKRIMALRKAEKEEEKAERRRKLGLAPEDPSTLKPSASVVEEKKSMLPIRPATKADQIRECLRSLKQHHKASSFRQVKLALRTLLTYVGNVARNPSEEKFRKIRLTNQSFQERVGGLKGGIEFLELCGFEKMEGDDFLFLVSDKVDIGVLNSAGAELDSALKNPFFGVL | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5748951 | 5754508 | - | Bda001391.1 | Bda13g00486 | 18617 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g00486 | 398 | Coils | Coil | 178 | 213 | - | - | |
Bda13g00486 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 45 | 67 | IPR013087 | - | |
Bda13g00486 | 398 | Gene3D | - | 112 | 158 | - | - | |
Bda13g00486 | 398 | SUPERFAMILY | UBA-like | 91 | 163 | IPR009060 | GO:0005515 | |
Bda13g00486 | 398 | PANTHER | F13M7.16 PROTEIN | 1 | 398 | - | - | |
Bda13g00486 | 398 | Pfam | UBA/TS-N domain | 113 | 147 | IPR015940 | - | |
Bda13g00486 | 398 | SUPERFAMILY | PUG domain-like | 293 | 394 | IPR036339 | - | |
Bda13g00486 | 398 | Coils | Coil | 216 | 244 | - | - | |
Bda13g00486 | 398 | PANTHER | F13M7.16 PROTEIN | 1 | 398 | - | - | |
Bda13g00486 | 398 | MobiDBLite | consensus disorder prediction | 237 | 272 | - | - | |
Bda13g00486 | 398 | CDD | PUB_UBA_plant | 291 | 398 | - | - | |
Bda13g00486 | 398 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 110 | 151 | IPR015940 | - | |
Bda13g00486 | 398 | Gene3D | - | 289 | 388 | - | - | |
Bda13g00486 | 398 | SMART | uba_6 | 112 | 150 | IPR015940 | - | |
Bda13g00486 | 398 | SMART | PGNneu | 308 | 371 | - | - | |
Bda13g00486 | 398 | Pfam | PUB domain | 305 | 375 | IPR018997 | - | |
Bda13g00486 | 398 | CDD | UBA_PUB_plant | 110 | 158 | - | - | |
Bda13g00486 | 398 | MobiDBLite | consensus disorder prediction | 237 | 256 | - | - | |
Bda13g00486 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 30 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01802 | Bda-Chr1:54239173 | Bda13g00486 | Bda-Chr13:5748951 | 2.25E-09 | dispersed | |
Bda11g00346 | Bda-Chr11:3865693 | Bda13g00486 | Bda-Chr13:5748951 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g00486 | K24348 | - | jre:109003439 | 560.451 |