Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00486 ATGTCGGGCGTTTCTCTGAAGTGCGGTGACTGTGGAGCTCTATTGAGGTCTGTACAAGAAGCTCAAGAGCATGCAGAGCTCACCTCTCACTCCAATTTCTCCGAGTCTGCTGAGGCTGTTCTCAATCTCGTTTGCACCACTTGCGGCAAACCATGCCGTTCCAAAACTGAAACTGACTTGCACACAAAAAGAACTAGCCATGCTGATTTTACTGATAAGACTTCAGAGGTGACGAAACCAATAAATTTAGAGGTCCCCAAGATAGCTGAAGAAGCAGAAGAGGCTGCAAAGACTAGTACTAGTCAGCCTGAAGAAATGGTTGTGCCAGAGGTTGACAAAAAGGTGCTTGAAGAGCTTGAAGCAATGGGTTTCTCAACAGCCCGCGCTACTCGCGCCCTTCATTATTCTGGTAACTCTGGTGTTGAGGCTGCTATTAATTGGGTAGTTGAACATGAAGACGATCCTGACATAGATCAGATGCCTCTGGTACCTTTGAACACAAACGTTGGGGCTCCAAAACCTTCTCTTACTTCGGAAGAAATTAAAATTAAACAACAAGAGCTAAGAGAACGTGCTCGCAAGAAAAAAGAAGAGGAAGAAAAGAAAACAGAAAGAGAAAGGGAAAAGGAAAGAATTCGAGTGGGCAAGGAGCTTTTAGAAGCAAAGAGAATTGAGGAAGAGAATGAACGGAAAAGGATTATGGCTTTGCGAAAAGCTGAAAAGGAGGAAGAGAAAGCAGAAAGAAGAAGGAAGCTTGGATTGGCACCAGAAGATCCTTCTACACTAAAACCTTCTGCATCTGTTGTTGAAGAGAAAAAGAGCATGTTGCCAATTAGGCCTGCCACGAAGGCTGATCAAATTCGAGAATGTTTGCGATCTCTTAAACAGCATCACAAGGCAAGTTCATTCAGACAAGTGAAGCTAGCATTACGGACTCTTCTTACTTATGTGGGGAATGTGGCCCGCAATCCTAGCGAGGAAAAATTCCGAAAGATAAGACTCACAAACCAATCCTTCCAGGAGAGAGTCGGCGGATTGAAAGGCGGTATTGAGTTTCTCGAGCTGTGCGGGTTTGAGAAAATGGAAGGAGATGACTTCTTGTTTCTGGTAAGTGACAAAGTTGATATTGGGGTCTTGAACTCAGCTGGTGCAGAGCTGGACTCTGCTCTGAAGAATCCTTTTTTTGGGGTTCTTTAA 1197 44.36 MSGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESAEAVLNLVCTTCGKPCRSKTETDLHTKRTSHADFTDKTSEVTKPINLEVPKIAEEAEEAAKTSTSQPEEMVVPEVDKKVLEELEAMGFSTARATRALHYSGNSGVEAAINWVVEHEDDPDIDQMPLVPLNTNVGAPKPSLTSEEIKIKQQELRERARKKKEEEEKKTEREREKERIRVGKELLEAKRIEEENERKRIMALRKAEKEEEKAERRRKLGLAPEDPSTLKPSASVVEEKKSMLPIRPATKADQIRECLRSLKQHHKASSFRQVKLALRTLLTYVGNVARNPSEEKFRKIRLTNQSFQERVGGLKGGIEFLELCGFEKMEGDDFLFLVSDKVDIGVLNSAGAELDSALKNPFFGVL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5748951 5754508 - Bda001391.1 Bda13g00486 18617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00486 398 Coils Coil 178 213 - -
Bda13g00486 398 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Bda13g00486 398 Gene3D - 112 158 - -
Bda13g00486 398 SUPERFAMILY UBA-like 91 163 IPR009060 GO:0005515
Bda13g00486 398 PANTHER F13M7.16 PROTEIN 1 398 - -
Bda13g00486 398 Pfam UBA/TS-N domain 113 147 IPR015940 -
Bda13g00486 398 SUPERFAMILY PUG domain-like 293 394 IPR036339 -
Bda13g00486 398 Coils Coil 216 244 - -
Bda13g00486 398 PANTHER F13M7.16 PROTEIN 1 398 - -
Bda13g00486 398 MobiDBLite consensus disorder prediction 237 272 - -
Bda13g00486 398 CDD PUB_UBA_plant 291 398 - -
Bda13g00486 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Bda13g00486 398 Gene3D - 289 388 - -
Bda13g00486 398 SMART uba_6 112 150 IPR015940 -
Bda13g00486 398 SMART PGNneu 308 371 - -
Bda13g00486 398 Pfam PUB domain 305 375 IPR018997 -
Bda13g00486 398 CDD UBA_PUB_plant 110 158 - -
Bda13g00486 398 MobiDBLite consensus disorder prediction 237 256 - -
Bda13g00486 398 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01802 Bda-Chr1:54239173 Bda13g00486 Bda-Chr13:5748951 2.25E-09 dispersed
Bda11g00346 Bda-Chr11:3865693 Bda13g00486 Bda-Chr13:5748951 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00486 K24348 - jre:109003439 560.451