Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g00487 | ATGCTTTCTGGGTTTTGCCAGGAAAGTTCGAGAATGTATTCTGGTCTCCACTCTCTACCGATCGATGCCAAGTTTCAGGGATCTTTGGACGGAACCAACTTGCCTGGCGATGCTTGTTTAGTTCTTACTTCCGATCCGAAGCCTCGCCTCCGGTGGACAGCAGAGCTACACGAGAGATTCGTTGACGCCGTAACTCAGCTTGGTGGCCCTGAAAAAGCAACACCTAAGACTATAATGAGAACAATGGGAGTTAAAGGTTTAACCCTCTATCACTTGAAATCGCACCTCCAGAAATACCGGTTGGGGAAGCAATCCAGCAAGGAATTGGCCGAGAACATGAAGGATGGTATCGACCTTTGGCTCCTCTTTTATTCTCAGGTCAGTTCACATATTACTGTTTTTCTTCGTTTGAACAGTGGCTATCAGGTTACTGAAGCTTTGCGGGTTCAAATGGAAGTCCAGAGAAGACTACATGAGCAGCTGGAGGTCCAGCGTCGGCTTCAACTACGCATCGAAGCACAAGGAAAATACCTGCAATCAATTCTCGAGAAAGCATGTCAAGCCTTAAACGATCAAACTGCTGCACCGGCAGGGCTTGAGGCTGCGAGAGAAGAGCTGTCCGAGCTAGAAATTAAGGTTTCAACCAATTATCGAGGAATGGGCTCTCGGGACACACTCAAAATGCCACCTTCCTTATCGGAACTCTCAGCAGCTCTTGAAAGTCGAAGTACTGTTCCCAATATTCCTTCTCGCGTGGGAGATTGCTCTGTCGAAAGTTGCTTGACATCGGCAGGAAGCCCCGTTTCTCCCACGCGAAAAGGCTCGGCCACTGCGGTGATGGAGAAGAGACCAAGGTTCTTGTTCGGAAACGGAGACTCGATGTCTGTTGACCCAAACATGCGACAAGAAATCGAATGGATGATGACAAACATCGGATGA | 939 | 48.46 | MLSGFCQESSRMYSGLHSLPIDAKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSSKELAENMKDGIDLWLLFYSQVSSHITVFLRLNSGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACQALNDQTAAPAGLEAAREELSELEIKVSTNYRGMGSRDTLKMPPSLSELSAALESRSTVPNIPSRVGDCSVESCLTSAGSPVSPTRKGSATAVMEKRPRFLFGNGDSMSVDPNMRQEIEWMMTNIG | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5755722 | 5758016 | - | Bda001392.1 | Bda13g00487 | 18618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g00487 | 312 | Gene3D | - | 46 | 105 | - | - | |
Bda13g00487 | 312 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 12 | 309 | IPR044848 | GO:0003700 | |
Bda13g00487 | 312 | Pfam | Myb-like DNA-binding domain | 50 | 100 | IPR001005 | - | |
Bda13g00487 | 312 | Pfam | MYB-CC type transfactor, LHEQLE motif | 142 | 187 | IPR025756 | - | |
Bda13g00487 | 312 | SUPERFAMILY | Homeodomain-like | 47 | 103 | IPR009057 | - | |
Bda13g00487 | 312 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 44 | 104 | IPR017930 | - | |
Bda13g00487 | 312 | PANTHER | PROTEIN PHR1-LIKE 2 | 12 | 309 | - | - | |
Bda13g00487 | 312 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 47 | 102 | IPR006447 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00896 | Bda-Chr2:49319296 | Bda13g00487 | Bda-Chr13:5755722 | 1.11E-68 | dispersed | |
Bda09g01572 | Bda-Chr9:47239047 | Bda13g00487 | Bda-Chr13:5755722 | 1.62E-50 | dispersed | |
Bda11g01213 | Bda-Chr11:12502897 | Bda13g00487 | Bda-Chr13:5755722 | 6.15E-51 | dispersed | |
Bda13g00487 | Bda-Chr13:5755722 | Bda14g00491 | Bda-Chr14:3575195 | 1.62E-68 | dispersed | |
Bda05g01256 | Bda-Chr5:60368937 | Bda13g00487 | Bda-Chr13:5755722 | 4.57E-60 | transposed | |
Bda07g00065 | Bda-Chr7:893250 | Bda13g00487 | Bda-Chr13:5755722 | 9.21E-58 | transposed | |
Bda11g00350 | Bda-Chr11:3890043 | Bda13g00487 | Bda-Chr13:5755722 | 1.15E-178 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16876 | PF00249 | Myb_DNA-binding | 2.60E-07 | CL0123 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g00487 | - | - | rcu:8280672 | 407.527 |