Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00487 ATGCTTTCTGGGTTTTGCCAGGAAAGTTCGAGAATGTATTCTGGTCTCCACTCTCTACCGATCGATGCCAAGTTTCAGGGATCTTTGGACGGAACCAACTTGCCTGGCGATGCTTGTTTAGTTCTTACTTCCGATCCGAAGCCTCGCCTCCGGTGGACAGCAGAGCTACACGAGAGATTCGTTGACGCCGTAACTCAGCTTGGTGGCCCTGAAAAAGCAACACCTAAGACTATAATGAGAACAATGGGAGTTAAAGGTTTAACCCTCTATCACTTGAAATCGCACCTCCAGAAATACCGGTTGGGGAAGCAATCCAGCAAGGAATTGGCCGAGAACATGAAGGATGGTATCGACCTTTGGCTCCTCTTTTATTCTCAGGTCAGTTCACATATTACTGTTTTTCTTCGTTTGAACAGTGGCTATCAGGTTACTGAAGCTTTGCGGGTTCAAATGGAAGTCCAGAGAAGACTACATGAGCAGCTGGAGGTCCAGCGTCGGCTTCAACTACGCATCGAAGCACAAGGAAAATACCTGCAATCAATTCTCGAGAAAGCATGTCAAGCCTTAAACGATCAAACTGCTGCACCGGCAGGGCTTGAGGCTGCGAGAGAAGAGCTGTCCGAGCTAGAAATTAAGGTTTCAACCAATTATCGAGGAATGGGCTCTCGGGACACACTCAAAATGCCACCTTCCTTATCGGAACTCTCAGCAGCTCTTGAAAGTCGAAGTACTGTTCCCAATATTCCTTCTCGCGTGGGAGATTGCTCTGTCGAAAGTTGCTTGACATCGGCAGGAAGCCCCGTTTCTCCCACGCGAAAAGGCTCGGCCACTGCGGTGATGGAGAAGAGACCAAGGTTCTTGTTCGGAAACGGAGACTCGATGTCTGTTGACCCAAACATGCGACAAGAAATCGAATGGATGATGACAAACATCGGATGA 939 48.46 MLSGFCQESSRMYSGLHSLPIDAKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSSKELAENMKDGIDLWLLFYSQVSSHITVFLRLNSGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACQALNDQTAAPAGLEAAREELSELEIKVSTNYRGMGSRDTLKMPPSLSELSAALESRSTVPNIPSRVGDCSVESCLTSAGSPVSPTRKGSATAVMEKRPRFLFGNGDSMSVDPNMRQEIEWMMTNIG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5755722 5758016 - Bda001392.1 Bda13g00487 18618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00487 312 Gene3D - 46 105 - -
Bda13g00487 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 309 IPR044848 GO:0003700
Bda13g00487 312 Pfam Myb-like DNA-binding domain 50 100 IPR001005 -
Bda13g00487 312 Pfam MYB-CC type transfactor, LHEQLE motif 142 187 IPR025756 -
Bda13g00487 312 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Bda13g00487 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Bda13g00487 312 PANTHER PROTEIN PHR1-LIKE 2 12 309 - -
Bda13g00487 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00896 Bda-Chr2:49319296 Bda13g00487 Bda-Chr13:5755722 1.11E-68 dispersed
Bda09g01572 Bda-Chr9:47239047 Bda13g00487 Bda-Chr13:5755722 1.62E-50 dispersed
Bda11g01213 Bda-Chr11:12502897 Bda13g00487 Bda-Chr13:5755722 6.15E-51 dispersed
Bda13g00487 Bda-Chr13:5755722 Bda14g00491 Bda-Chr14:3575195 1.62E-68 dispersed
Bda05g01256 Bda-Chr5:60368937 Bda13g00487 Bda-Chr13:5755722 4.57E-60 transposed
Bda07g00065 Bda-Chr7:893250 Bda13g00487 Bda-Chr13:5755722 9.21E-58 transposed
Bda11g00350 Bda-Chr11:3890043 Bda13g00487 Bda-Chr13:5755722 1.15E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16876 PF00249 Myb_DNA-binding 2.60E-07 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00487 - - rcu:8280672 407.527