Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00490 ATGGATAAAGTAAGCTTCACAGAGGTGATGCAGTTCGCAGATTTTGGACCAAAATTAGGTTTAACACAAAACAAGATAGTTGAAGAGTATCAATCAGGAATGGATCCGATATACTTCCTCAAATTCCCCGTCTTAAACGACAAAGTAGACGATCAATCTCTTGTGGCTTCAAGAGAGGAAGAAACCGACGAGAGGTTTCGAGAGATGGCTATGGCGGATAGGAACAAGAGGAAAAGGCCGAGAACGATCAAAACCAGCGAAGAAGTTGAAAGCCAGAGAATGACGCATATTGCAGTGGAGAGAAATAGAAGAAAGCAAATGAATGAACATCTTCGAGTTTTGAGGTCTCTCATGCCAGGCTCCTACGTTCAAAGGGGAGACCAAGCTTCCATAATCGGAGGAGCAATTGAGTTCGTCAGAGAATTGGAGCAACTTCTTCAATGCTTAGAGTCGCAGAAAAGGAGGAGAATCATGGGAGAAGCTCCGAGACAAATAGGCGAATCATCCACAGTCGGAATACAGCAAAATCAACCTCCATTTTTTCCTCCGCTGCCTCTTCCAAACGAACAGCTGAAGATCATGGACTTCGAGACCGGCCTCCGAGAAGAAACCGCCGAGAACAAGTCTGGATTAGCTGACGTGGAAGTGAAGCTTTTAGGCTTTGATGCGATGATCAAAATCCTATCGAGAAGAAGACCAGGCCAGCTCATTAAGACCATTGCTGCGCTCGAAGATTTGCAGCTAAATATTCTTCACACCAACATCACAACCATCGAACAAACAGTTCTTTATTCATTCAACGTCAAGGTTACAGGTGAATCGAGATTCTCAGCTGAGGACATCGCTACCTCAGTTCAACAGATTTTTAGTTTTATTAATGCAAACAATGCTTGA 894 43.74 MDKVSFTEVMQFADFGPKLGLTQNKIVEEYQSGMDPIYFLKFPVLNDKVDDQSLVASREEETDERFREMAMADRNKRKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRIMGEAPRQIGESSTVGIQQNQPPFFPPLPLPNEQLKIMDFETGLREETAENKSGLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLNILHTNITTIEQTVLYSFNVKVTGESRFSAEDIATSVQQIFSFINANNA 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5769953 5771184 - Bda001396.1 Bda13g00490 18621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00490 297 CDD bHLH_AtFAMA_like 94 165 - -
Bda13g00490 297 CDD ACT_UUR-ACR-like 224 288 - -
Bda13g00490 297 ProSiteProfiles ACT domain profile. 224 297 IPR002912 -
Bda13g00490 297 PANTHER TRANSCRIPTION FACTOR FAMA 64 296 - -
Bda13g00490 297 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Bda13g00490 297 Gene3D - 82 156 IPR036638 GO:0046983
Bda13g00490 297 PANTHER TRANSCRIPTION FACTOR FAMA 2 59 - -
Bda13g00490 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Bda13g00490 297 MobiDBLite consensus disorder prediction 72 94 - -
Bda13g00490 297 SMART finulus 97 148 IPR011598 GO:0046983
Bda13g00490 297 PANTHER TRANSCRIPTION FACTOR FAMA 2 59 IPR044283 GO:0003700|GO:0010052
Bda13g00490 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 158 IPR036638 GO:0046983
Bda13g00490 297 PANTHER TRANSCRIPTION FACTOR FAMA 64 296 IPR044283 GO:0003700|GO:0010052
Bda13g00490 297 SUPERFAMILY ACT-like 224 287 IPR045865 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g00398 Bda13g00490 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00110 Bda-Chr5:5386189 Bda13g00490 Bda-Chr13:5769953 1.11E-43 dispersed
Bda11g00562 Bda-Chr11:5822685 Bda13g00490 Bda-Chr13:5769953 2.22E-51 dispersed
Bda13g00490 Bda-Chr13:5769953 Bda13g00549 Bda-Chr13:6468389 2.07E-55 dispersed
Bda13g00490 Bda-Chr13:5769953 Bda11g00398 Bda-Chr11:4316949 6.97E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16877 PF00010 HLH 5.40E-10 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00490 - - pvy:116125979 426.017