Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00491 ATGGGTGGTGAAGGAAAAGTGTTCTCCTTGCGAGAAGTCTCGGAGCACAACACGCCCAGGGACTGTTGGCTAATCATCAATGGCAAAGTGTATAATGTGACCAACTTCTTGGAAGACCATCCCGGCGGCGATGAAGTTCTGTTATCTGCTACAGGAAAGGACGCAACTGATGATTTTGAAGATGTTGGTCATAGTGACAGTGCAAGAGAAATGATGAGCAAATACTATGTTGGTGAGATAGATTCTTCGACTATTCCGAAAAAAACAACATATATTCCTCCAAAACAGCCTCACTACAATCAGGATAAGACATCTGAATTCATTGTCAAGCTCCTCCAATTCCTCGTTCCGCTTGCTATACTGGGATTGGCTGTCGGAGTGCGCTTCTACACAAAATCAAGCTGA 405 44.2 MGGEGKVFSLREVSEHNTPRDCWLIINGKVYNVTNFLEDHPGGDEVLLSATGKDATDDFEDVGHSDSAREMMSKYYVGEIDSSTIPKKTTYIPPKQPHYNQDKTSEFIVKLLQFLVPLAILGLAVGVRFYTKSS 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5773805 5775700 + Bda001397.1 Bda13g00491 18622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00491 134 PANTHER CYTOCHROME B5 1 132 - -
Bda13g00491 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Bda13g00491 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Bda13g00491 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Bda13g00491 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Bda13g00491 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Bda13g00491 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 93 IPR036400 -
Bda13g00491 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Bda13g00491 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 80 IPR001199 -
Bda13g00491 134 Gene3D - 3 86 IPR036400 -
Bda13g00491 134 PANTHER BNAC04G43300D PROTEIN 1 132 - -
Bda13g00491 134 SMART Cyt_b5_2 8 81 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00491 K23490 CYB5; cytochrome b5 - qsu:112039863 254.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00091 Bda-Chr8:825471 Bda13g00491 Bda-Chr13:5773805 1.73E-47 dispersed
Bda13g00400 Bda-Chr13:4962212 Bda13g00491 Bda-Chr13:5773805 3.09E-51 dispersed
Bda13g00491 Bda-Chr13:5773805 Bda13g01500 Bda-Chr13:38038976 3.23E-18 dispersed
Bda04g00888 Bda-Chr4:58634581 Bda13g00491 Bda-Chr13:5773805 3.69E-12 transposed
Bda05g00891 Bda-Chr5:57337444 Bda13g00491 Bda-Chr13:5773805 2.54E-53 transposed
Bda07g01952 Bda-Chr7:36938338 Bda13g00491 Bda-Chr13:5773805 4.40E-67 transposed
Bda11g00353 Bda-Chr11:3925250 Bda13g00491 Bda-Chr13:5773805 1.04E-90 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g01952 . 1 134 NADPH P450 reductases AT5G53560 81.3 5.4e-61 230.3
Bda11g00353 . 4 137 NADPH P450 reductases AT5G53560 70.1 5.4e-53 203.8
Bda13g00491 . 1 134 NADPH P450 reductases AT5G53560 68.7 7.9e-52 199.9
Bda13g00400 . 7 143 NADPH P450 reductases AT5G53560 54.0 5.8e-39 157.1
Bda11g00353 . 4 137 NADPH P450 reductases AT5G48810 64.0 7.7e-50 193.4
Bda13g00491 . 1 134 NADPH P450 reductases AT5G48810 62.5 3.8e-49 191.0
Bda07g01952 . 1 134 NADPH P450 reductases AT5G48810 60.3 2.0e-45 178.7
Bda05g00891 . 1 139 NADPH P450 reductases AT5G48810 56.1 1.7e-41 165.6
Bda13g00491 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.6e-50 193.0
Bda11g00353 . 25 136 NADPH P450 reductases AT2G32720 80.4 3.7e-49 191.0
Bda07g01952 . 22 133 NADPH P450 reductases AT2G32720 66.1 3.4e-39 157.9
Bda05g00993 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.4
Bda03g01493 BCT 2 253 NADPH P450 reductases AT5G17770 80.2 1.1e-116 416.4
Bda09g01304 . 7 325 NADPH P450 reductases AT5G17770 63.3 5.9e-110 394.0
Bda07g01952 . 1 134 NADPH P450 reductases AT5G53560 81.3 5.4e-61 230.3
Bda11g00353 . 4 137 NADPH P450 reductases AT5G53560 70.1 5.4e-53 203.8
Bda13g00491 . 1 134 NADPH P450 reductases AT5G53560 68.7 7.9e-52 199.9
Bda13g00400 . 7 143 NADPH P450 reductases AT5G53560 54.0 5.8e-39 157.1
Bda11g00353 . 4 137 NADPH P450 reductases AT5G48810 64.0 7.7e-50 193.4
Bda13g00491 . 1 134 NADPH P450 reductases AT5G48810 62.5 3.8e-49 191.0
Bda07g01952 . 1 134 NADPH P450 reductases AT5G48810 60.3 2.0e-45 178.7
Bda05g00891 . 1 139 NADPH P450 reductases AT5G48810 56.1 1.7e-41 165.6
Bda13g00491 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.6e-50 193.0
Bda11g00353 . 25 136 NADPH P450 reductases AT2G32720 80.4 3.7e-49 191.0
Bda07g01952 . 22 133 NADPH P450 reductases AT2G32720 66.1 3.4e-39 157.9
Bda05g00993 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.4
Bda03g01493 BCT 2 253 NADPH P450 reductases AT5G17770 80.2 1.1e-116 416.4
Bda09g01304 . 7 325 NADPH P450 reductases AT5G17770 63.3 5.9e-110 394.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00491 Bda_Chr13 FPKM 6.640805 6.884798 6.463173 4.841821 9.032083 14.791012 8.079103 16.234346 14.09584