Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00493 ATGGCGGCCCTGCGAATTCTCTTCTCTGTTTTTCTCCTCCATCTTCTTCTTCTCTCTCCTACCGCTTTGGGATACTCGAGAAAGGAAATTATCAGCTGGTGCAGCCAAATGCCATATCCAAAACCTTGCGAGTATTTCTTAACAGAAAACCCTTCTGCTTTGCCCATCAGAGACAAATCTGATTTTCTGAAAATCTCCATTGAACTAGCTCTAGACCGAGCTGTAAACGCAGAGAAGAACACGCTTTTACTTGGCCTCAAGTGCAGGAACGAGAAAGAAAAGGCTGCCTGGGCCGACTGCCTTGAGCTTTACAAATACACAATTGAAAAGCTCAACAAAACCATCGACCCGAACATCAAGTGCAGCGACCACGACTCGCAGTCATGGCTGAGTACTGCTCTGACAAACCTCGAGACCTGCTGGGCTGGGTTCACAGAGCTCGGCGTGACCGACTACCTTCCTCCGTTGATGTCTAACAACGTTTCGAAATTGATCAGCAACACTTTGTCTGTAAACAAACCTCTTTACAACCCGAAACCCAAATACAAACACGGGTTTCCGACGTGGGTTAAGCCAGGTGACCGGAAACTGTTGCAGGCGCCTTCTCCGTCGGTATCTCCAAATATAGTGGTGGCTCAAGATGGGTCTGGAAATTATGACACGATTAGTGCCGCTGTTGGAGCTGCTTCTGACCAGTCGGGTACTGAGAGGTACGTGATTTACGTGAAAGCAGGAACTTATAAAGAGAACATCGAGATAAAAACGACGAACATCATGTTGGTCGGAGATGGAATCGGGAAAACCATCATTACCGGAAGTAAAAGCGTTGGTGGAGGTAGCACAACCTTCCGGTCAGCCACAGTTGCTGTGGTTGGAGATGGTTTTATTGGGCGTGACATCACAATTGTAAACACGGCCGGCCCGGAAAACCACCAAGCAGTAGCTCTCCGGTCAGGCTCGGACTTCTCGGTGTTCTACAAATGCAGTTTTGAAGGCTATCAAGACACCCTTTACGTCCACTCGGAACGACAATTCTATCGAGAATGTGACATTTACGGCACAGTTGATTTCATTTTCGGCAATGCTGCTGTGGTGCTCCAAAACTGTAATATCTCTCCACGCAAACCTCCAAACAAGACCAACACTCTCACTGCTCAAGGCCGAACTGATCAGAACCAGAACACTGGGATTTCGATTATCAATTGTCGAGTCACAGCGTCGGCGGAGTTAGAGCCCGTGGTTAGTACGATCAAGACGTACCTAGGGCGGCCGTGGAAGGAGTATTCTAGAACCGTTTTCATGAAGACATACCTCGATAGCTTGATTAATCCTGCCGGATGGTTGGAGTGGAGTGGCGATTTTGCCTTAAAGACGTTGTATTACGGTGAGTATATGAATAATGGTCCTGGGTCGTCAACTGCCGATCGAGTTAACTGGCCGGGATATCGTGTCATCACAAGTGCTTCAGAAGCTTCGCAATTCACCGTCGAAAACTTTATCGCCGGAAATACTTGGCTTTCAGCCACTGATGTTCCGTACACAACTGGCATCTAA 1554 47.88 MAALRILFSVFLLHLLLLSPTALGYSRKEIISWCSQMPYPKPCEYFLTENPSALPIRDKSDFLKISIELALDRAVNAEKNTLLLGLKCRNEKEKAAWADCLELYKYTIEKLNKTIDPNIKCSDHDSQSWLSTALTNLETCWAGFTELGVTDYLPPLMSNNVSKLISNTLSVNKPLYNPKPKYKHGFPTWVKPGDRKLLQAPSPSVSPNIVVAQDGSGNYDTISAAVGAASDQSGTERYVIYVKAGTYKENIEIKTTNIMLVGDGIGKTIITGSKSVGGGSTTFRSATVAVVGDGFIGRDITIVNTAGPENHQAVALRSGSDFSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNISPRKPPNKTNTLTAQGRTDQNQNTGISIINCRVTASAELEPVVSTIKTYLGRPWKEYSRTVFMKTYLDSLINPAGWLEWSGDFALKTLYYGEYMNNGPGSSTADRVNWPGYRVITSASEASQFTVENFIAGNTWLSATDVPYTTGI 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5820585 5822624 - Bda001399.1 Bda13g00493 18624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00493 517 PANTHER PECTINESTERASE 9 516 - -
Bda13g00493 517 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Bda13g00493 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Bda13g00493 517 CDD PMEI-like_3 32 175 - -
Bda13g00493 517 SUPERFAMILY Pectin lyase-like 205 516 IPR011050 -
Bda13g00493 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Bda13g00493 517 PANTHER PECTINESTERASE 9 516 - -
Bda13g00493 517 Pfam Plant invertase/pectin methylesterase inhibitor 30 170 IPR006501 GO:0004857
Bda13g00493 517 Pfam Pectinesterase 208 503 IPR000070 GO:0030599|GO:0042545
Bda13g00493 517 Gene3D - 202 517 IPR012334 -
Bda13g00493 517 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Bda13g00493 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 176 IPR035513 -
Bda13g00493 517 SMART PMEI_2 25 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01978 Bda-Chr1:56162542 Bda13g00493 Bda-Chr13:5820585 8.44E-121 dispersed
Bda13g00435 Bda-Chr13:5290181 Bda13g00493 Bda-Chr13:5820585 0 dispersed
Bda13g00493 Bda-Chr13:5820585 Bda15g00760 Bda-Chr15:11202090 0 dispersed
Bda13g00493 Bda-Chr13:5820585 Bda13g00495 Bda-Chr13:5829495 1.19E-129 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00493 K01051 - vvi:100255703 788.489