Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00500 ATGGGGTTTTATGGGTCTGTAATTGTCGTCTGCGTCCTGCTTTTCATACCTGTGGCTCTTGGAAGTCCGCCGAGGAGGCCGGTGGATGTTCCGTTTGGCAGAAACTATGCACCCACTTGGGCTTTTGATCACATTAAGTACTTCAATGGCGGCTCTGAGATTCAACTTCACCTGGATAAATACACAGGTACTGGTTTTCAGTCCAAAGGCTCCTACTTGTTCGGCCATTTCAGTATGCAAATAAAGCTGGTTCCCGATGACTCTGCCGGCACCGTTACAGCTTTCTACTTATCTTCTCAAAACTCAGAGCACGATGAGATAGATTTTGAGTTCTTGGGGAACAGATCAGGGCAACCCTACATTCTGCAGACAAATGTGTTCACCGGAGGGAAGGGAGACAGAGAACAGAGGATCTATCTCTGGTTCGACCCCTCTAAGGCCTACCACTCTTACTCTGTTCTCTGGAATCTCTATCAGATAGTATTCTTCGTCGACGACGTTCCGATCAGAGTATTCAAGAACTGCAAGGACATAGGGGTGAAGTTTCCGTTCGACCAGCCGATGAAGATCTACTCAAGCCTATGGAATGCGGATGACTGGGCGACCAGGGGAGGGCTGGAGAAGACAGACTGGAACAAGGCTCCGTTCATCGCCCACTACAAGGGCTTCCACGTCGACGGCTGCGAGGCCTCCGTGCAGGCTAAGTTCTGCGCCACCCAGGGCAAGCGTTGGTGGGACCAGACCGAATTCCGAGACCTGGACGGACTCCAGTACCGGCGGCTCAGTTGGGTTCGACAGAAATACACCATCTACAACTACTGCAGCGACAGAGTGAGATACCCATCACTCCCGCCGGAATGCAAGAGAGACCGAGACATC 879 51.65 MGFYGSVIVVCVLLFIPVALGSPPRRPVDVPFGRNYAPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQIKLVPDDSAGTVTAFYLSSQNSEHDEIDFEFLGNRSGQPYILQTNVFTGGKGDREQRIYLWFDPSKAYHSYSVLWNLYQIVFFVDDVPIRVFKNCKDIGVKFPFDQPMKIYSSLWNADDWATRGGLEKTDWNKAPFIAHYKGFHVDGCEASVQAKFCATQGKRWWDQTEFRDLDGLQYRRLSWVRQKYTIYNYCSDRVRYPSLPPECKRDRDI 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5884157 5885505 - Bda032855 Bda13g00500 18631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00500 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Bda13g00500 293 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bda13g00500 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 291 IPR013320 -
Bda13g00500 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 8 291 IPR044791 GO:0004553
Bda13g00500 293 Gene3D - 21 293 - -
Bda13g00500 293 PIRSF EndGlu_transf 2 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bda13g00500 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 220 IPR000757 GO:0004553|GO:0005975
Bda13g00500 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Bda13g00500 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 4 8 291 - -
Bda13g00500 293 Pfam Glycosyl hydrolases family 16 33 212 IPR000757 GO:0004553|GO:0005975
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01113 Bda13g00500 CCT
Bda03g01113 Bda13g00500 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00340 Bda-Chr6:5455544 Bda13g00500 Bda-Chr13:5884157 2.40E-55 dispersed
Bda09g00748 Bda-Chr9:13186929 Bda13g00500 Bda-Chr13:5884157 1.64E-60 dispersed
Bda10g01206 Bda-Chr10:46032485 Bda13g00500 Bda-Chr13:5884157 8.01E-59 dispersed
Bda11g00994 Bda-Chr11:9720459 Bda13g00500 Bda-Chr13:5884157 2.42E-100 dispersed
Bda13g00500 Bda-Chr13:5884157 Bda14g00720 Bda-Chr14:5456897 2.21E-103 dispersed
Bda06g01151 Bda-Chr6:40597037 Bda13g00500 Bda-Chr13:5884157 2.82E-89 transposed
Bda09g00579 Bda-Chr9:8117626 Bda13g00500 Bda-Chr13:5884157 1.56E-32 transposed
Bda11g00359 Bda-Chr11:3987323 Bda13g00500 Bda-Chr13:5884157 5.45E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00500 K08235 - jre:108997488 555.444