Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00507 ATGTTCAACTCAGCTACTGAGTCAAGTACCACCCACTCGTCTTTCTCCCCTAGCTCTTCTTCTTCTTCTTCTTCCGGACCCCACCCGAAGAAGAGTAAACGAACCAGAAATAGTGAAGGTAAACACCCGGTTTACAGAGGGGTCCGAATGGGGGCTTGGGGAAAATGGGTATCCGAAATCCGAAAACCCAGAAAGAAGAGCCGGATTTGCCTTGGAACTTTTTCGACGCCGGAAATGGCGGCCAGGGCTCATGTTGTCTCTGCTTTAACCATCAAGGGGAAATCGGCGATCCTCAACTTTCCAGAAATGGCAGGAATACTTCATCGGCCGTCTTCGAACTCTCCCCGTGACGTTCAAGCCGCCGCTGCTCTGGCCGCTTCAATGGAGGTTCTTCCGGCGACTCCTCCAGAATCGTCACATCACCCGACGTCTGAACCGTCATCTTCATCATCCTCCTTCAACGTTCCATCCCCGGAGGAACTTAGTGAGATAGTTCAACTTCCTAGTTTAGGAACGAGCTATGAATCGCCAGAGTCGCAATTCGTGCTAAATGACTCAGAAGATCGGTGCCTTTACACACAGAATTACAAGTACTTTAGCGATCAGGTAATTTGTAGGGAAAAGTTCAATTCAGACTCCATTGTTAGATTTAAAAATAGACGTAATAAGATCTCCAGAGGTTGA 684 48.25 MFNSATESSTTHSSFSPSSSSSSSSGPHPKKSKRTRNSEGKHPVYRGVRMGAWGKWVSEIRKPRKKSRICLGTFSTPEMAARAHVVSALTIKGKSAILNFPEMAGILHRPSSNSPRDVQAAAALAASMEVLPATPPESSHHPTSEPSSSSSSFNVPSPEELSEIVQLPSLGTSYESPESQFVLNDSEDRCLYTQNYKYFSDQVICREKFNSDSIVRFKNRRNKISRG 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6045528 6046211 - Bda001414.1 Bda13g00507 18638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00507 227 MobiDBLite consensus disorder prediction 137 156 - -
Bda13g00507 227 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Bda13g00507 227 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Bda13g00507 227 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Bda13g00507 227 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Bda13g00507 227 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Bda13g00507 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 6 213 - -
Bda13g00507 227 MobiDBLite consensus disorder prediction 1 28 - -
Bda13g00507 227 MobiDBLite consensus disorder prediction 132 156 - -
Bda13g00507 227 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Bda13g00507 227 MobiDBLite consensus disorder prediction 1 45 - -
Bda13g00507 227 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Bda13g00507 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 213 - -
Bda13g00507 227 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01093 Bda-Chr11:10692654 Bda13g00507 Bda-Chr13:6045528 1.59E-82 dispersed
Bda13g00507 Bda-Chr13:6045528 Bda13g01332 Bda-Chr13:35584239 9.97E-51 dispersed
Bda13g00507 Bda-Chr13:6045528 Bda01g02051 Bda-Chr1:56777298 4.42E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16879 PF00847 AP2 7.60E-09 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00507 K09286 - tcc:18588535 199.134