Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g00507 | ATGTTCAACTCAGCTACTGAGTCAAGTACCACCCACTCGTCTTTCTCCCCTAGCTCTTCTTCTTCTTCTTCTTCCGGACCCCACCCGAAGAAGAGTAAACGAACCAGAAATAGTGAAGGTAAACACCCGGTTTACAGAGGGGTCCGAATGGGGGCTTGGGGAAAATGGGTATCCGAAATCCGAAAACCCAGAAAGAAGAGCCGGATTTGCCTTGGAACTTTTTCGACGCCGGAAATGGCGGCCAGGGCTCATGTTGTCTCTGCTTTAACCATCAAGGGGAAATCGGCGATCCTCAACTTTCCAGAAATGGCAGGAATACTTCATCGGCCGTCTTCGAACTCTCCCCGTGACGTTCAAGCCGCCGCTGCTCTGGCCGCTTCAATGGAGGTTCTTCCGGCGACTCCTCCAGAATCGTCACATCACCCGACGTCTGAACCGTCATCTTCATCATCCTCCTTCAACGTTCCATCCCCGGAGGAACTTAGTGAGATAGTTCAACTTCCTAGTTTAGGAACGAGCTATGAATCGCCAGAGTCGCAATTCGTGCTAAATGACTCAGAAGATCGGTGCCTTTACACACAGAATTACAAGTACTTTAGCGATCAGGTAATTTGTAGGGAAAAGTTCAATTCAGACTCCATTGTTAGATTTAAAAATAGACGTAATAAGATCTCCAGAGGTTGA | 684 | 48.25 | MFNSATESSTTHSSFSPSSSSSSSSGPHPKKSKRTRNSEGKHPVYRGVRMGAWGKWVSEIRKPRKKSRICLGTFSTPEMAARAHVVSALTIKGKSAILNFPEMAGILHRPSSNSPRDVQAAAALAASMEVLPATPPESSHHPTSEPSSSSSSFNVPSPEELSEIVQLPSLGTSYESPESQFVLNDSEDRCLYTQNYKYFSDQVICREKFNSDSIVRFKNRRNKISRG | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6045528 | 6046211 | - | Bda001414.1 | Bda13g00507 | 18638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g00507 | 227 | MobiDBLite | consensus disorder prediction | 137 | 156 | - | - | |
Bda13g00507 | 227 | SUPERFAMILY | DNA-binding domain | 44 | 101 | IPR016177 | GO:0003677 | |
Bda13g00507 | 227 | Gene3D | AP2/ERF domain | 44 | 103 | IPR036955 | GO:0003700|GO:0006355 | |
Bda13g00507 | 227 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00507 | 227 | PRINTS | Ethylene responsive element binding protein signature | 67 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00507 | 227 | Pfam | AP2 domain | 43 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00507 | 227 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 6 | 213 | - | - | |
Bda13g00507 | 227 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Bda13g00507 | 227 | MobiDBLite | consensus disorder prediction | 132 | 156 | - | - | |
Bda13g00507 | 227 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00507 | 227 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Bda13g00507 | 227 | CDD | AP2 | 45 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00507 | 227 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 6 | 213 | - | - | |
Bda13g00507 | 227 | SMART | rav1_2 | 44 | 107 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g01093 | Bda-Chr11:10692654 | Bda13g00507 | Bda-Chr13:6045528 | 1.59E-82 | dispersed | |
Bda13g00507 | Bda-Chr13:6045528 | Bda13g01332 | Bda-Chr13:35584239 | 9.97E-51 | dispersed | |
Bda13g00507 | Bda-Chr13:6045528 | Bda01g02051 | Bda-Chr1:56777298 | 4.42E-97 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16879 | PF00847 | AP2 | 7.60E-09 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g00507 | K09286 | - | tcc:18588535 | 199.134 |