Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g00532 | ATGGGAAGAGGGAGAGTGGAGCTGAAGAGAATTGAGAACAAAATCAACAGGCAAGTGACCTTCGCAAAGAGAAGAAATGGACTTTTGAAGAAAGCATATGAGCTTTCCGTTCTTTGCGATGCAGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTTGAGAGGTACCAAAAGTGCAACTATGGAGCTCCAGAGCCAAGTGTTTCCACCAGAGAAGCCATGGAGTTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCACGTTATGATGATCTACTAAGATCCCAAAGGAACCTTTTGGGTGAAGACCTTGGCCCTCTGAGTAGTAAACATCTTGAGTCGCTTGAAAGGCAACTGGATTCATCACTCAAACTGATAAGATCGACAAGGACTCAATACATGCTGGATCAACTCAATGATCTTCAACGCAAGGAACACTTGCTGTGCGAAGCAAACAAAACCCTGAAACAAAGACTGATGGAAGGGTATCAAATAAGTTCACTACAGCTAATTCCAAATGAAGAGGATGTTGTGTATGATCGTCAACATGCTCAACCTCAGGCAGATGGATTCTTTCATCCCTTAGACTGTGAACCAACTTTGCAAATTGGATATCCGTCTGATCCAATAACAGCAGTGAATGGCGCAGGCCCAAGCCTAAACAATTACATGCCAGCGTGGTTACCATGA | 732 | 43.85 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPSVSTREAMELSSQQEYLKLKARYDDLLRSQRNLLGEDLGPLSSKHLESLERQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLCEANKTLKQRLMEGYQISSLQLIPNEEDVVYDRQHAQPQADGFFHPLDCEPTLQIGYPSDPITAVNGAGPSLNNYMPAWLP | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6364512 | 6368212 | + | Bda001443.1 | Bda13g00532 | 18663 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g00532 | 243 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00532 | 243 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00532 | 243 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00532 | 243 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00532 | 243 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00532 | 243 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00532 | 243 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 228 | - | - | |
Bda13g00532 | 243 | Coils | Coil | 126 | 146 | - | - | |
Bda13g00532 | 243 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00532 | 243 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Bda13g00532 | 243 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Bda13g00532 | 243 | Pfam | K-box region | 89 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda13g00532 | 243 | ProSiteProfiles | K-box domain profile. | 89 | 180 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda13g00532 | 243 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 228 | - | - | |
Bda13g00532 | 243 | SUPERFAMILY | SRF-like | 2 | 75 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01197 | Bda-Chr1:47235609 | Bda13g00532 | Bda-Chr13:6364512 | 4.39E-103 | dispersed | |
Bda11g00336 | Bda-Chr11:3774502 | Bda13g00532 | Bda-Chr13:6364512 | 3.03E-159 | dispersed | |
Bda13g00532 | Bda-Chr13:6364512 | Bda13g01744 | Bda-Chr13:40767458 | 9.88E-105 | dispersed | |
Bda11g00385 | Bda-Chr11:4218295 | Bda13g00532 | Bda-Chr13:6364512 | 3.03E-159 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16883 | PF01486 | K-box | 9.70E-24 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g00532 | - | - | tcc:18608957 | 420.624 |