Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00532 ATGGGAAGAGGGAGAGTGGAGCTGAAGAGAATTGAGAACAAAATCAACAGGCAAGTGACCTTCGCAAAGAGAAGAAATGGACTTTTGAAGAAAGCATATGAGCTTTCCGTTCTTTGCGATGCAGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTTGAGAGGTACCAAAAGTGCAACTATGGAGCTCCAGAGCCAAGTGTTTCCACCAGAGAAGCCATGGAGTTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCACGTTATGATGATCTACTAAGATCCCAAAGGAACCTTTTGGGTGAAGACCTTGGCCCTCTGAGTAGTAAACATCTTGAGTCGCTTGAAAGGCAACTGGATTCATCACTCAAACTGATAAGATCGACAAGGACTCAATACATGCTGGATCAACTCAATGATCTTCAACGCAAGGAACACTTGCTGTGCGAAGCAAACAAAACCCTGAAACAAAGACTGATGGAAGGGTATCAAATAAGTTCACTACAGCTAATTCCAAATGAAGAGGATGTTGTGTATGATCGTCAACATGCTCAACCTCAGGCAGATGGATTCTTTCATCCCTTAGACTGTGAACCAACTTTGCAAATTGGATATCCGTCTGATCCAATAACAGCAGTGAATGGCGCAGGCCCAAGCCTAAACAATTACATGCCAGCGTGGTTACCATGA 732 43.85 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPSVSTREAMELSSQQEYLKLKARYDDLLRSQRNLLGEDLGPLSSKHLESLERQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLCEANKTLKQRLMEGYQISSLQLIPNEEDVVYDRQHAQPQADGFFHPLDCEPTLQIGYPSDPITAVNGAGPSLNNYMPAWLP 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6364512 6368212 + Bda001443.1 Bda13g00532 18663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00532 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda13g00532 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda13g00532 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda13g00532 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda13g00532 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda13g00532 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda13g00532 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Bda13g00532 243 Coils Coil 126 146 - -
Bda13g00532 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda13g00532 243 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bda13g00532 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bda13g00532 243 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g00532 243 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g00532 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 228 - -
Bda13g00532 243 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01197 Bda-Chr1:47235609 Bda13g00532 Bda-Chr13:6364512 4.39E-103 dispersed
Bda11g00336 Bda-Chr11:3774502 Bda13g00532 Bda-Chr13:6364512 3.03E-159 dispersed
Bda13g00532 Bda-Chr13:6364512 Bda13g01744 Bda-Chr13:40767458 9.88E-105 dispersed
Bda11g00385 Bda-Chr11:4218295 Bda13g00532 Bda-Chr13:6364512 3.03E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16883 PF01486 K-box 9.70E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00532 - - tcc:18608957 420.624