Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00539 TTTTCTGAAGCGCGGTTGATTTTGGCGCCGAAAATGATGGTGGAGACGTCGCTTGATTTTCTGTTTCCATCTTGGTGGGAGATAGAGGTTACTGTAGCAACATCAATCTTCGTTATCTCAGCCTACTGGTTTTTCACTTACCGAAGCGGAGATGATCAAGTGGATCGCTCGCGAGTTGAAATTTCTCGTAGGGAAGCTATTGATGTTAATGACAAGGTAATTTCGTCGTATTTGACGCTTTGGAATAACATGTTGCGTAATTTGGAATTGTTGGCGGCAAAGAACCTTATTGGTGCAAACTTGAATGGAACCTCTGATCCCTATGCTATAATTACATGTGGTACACAAAAGCGATTTAGCTCAATGATTCCTGGTTCCAGAAATCCTATGTGGGGAGAGGAGTTTAATTTTTCTGTGGACGACCTTCCTGTTAAGATTAATATCACAATATATGACTGGGATATAATATGGAAAAGCGCTGTCCTTGGTTCAGTTACTGTTCCAGTTGAAAATGAAGGTCAAACTGGTGCTGTGTGGTATACATTGAACAGTCCCTCTGGACAGGTATGCCTTCACCTTAAAACAATAAAAATGCCTGTAAATGCTCCCAGGGATATGAGTGGCTATGCTGGAACCAATATTCGAAGAAGGATTTCCATAGACAAACAAGTGCCAACTGTGGTTGTTGTGCATAGTTATTCTTGTGCTCTTGAGAGGTCATTTCTATATCATGGTCGAATGTTTGTATCCGCATGGCATATTTGTTTCCATTCAAATGTTTTCTCCAAGCAAATGAAGGTGGTGATACCATTGGGAGATATAGATGAGATACGACGGAGTCAACATGCATTCATTAATCCTGCTATAACAATTACTCTCCGCATGGGTGCTGGTGGGCATGGCGTGCCTCCATTGGGAAGTCCTGATGGGAGAGTGAGATATATGTTTGCATCATTTTGGAACAGGAACCACGCAATAAGAGGCTTACAGCGTTCAGTGAAGAGTTTTCATGCAATGCTAGAGGCTGAAAAGAAGGAGAAGGCTGAATCGGAGCTACGCGCACATAGTAGCTCTATTAAGGGAAGCAAAAGGCATGTCAAGATAACAAATGAAACTGTACCCATAAATGGGAACGTTCCCTCTTTTATTAAAGAAGAAGTTCTTTGTGACATATACAAAGGTGTTTTCCAGTGCACTGCTGAACAGTTTTTCAATTTATATTTGAGTGATGAGTCAACTTTTACAAATTCACATCGGTTAGCACGGAAAGATACTAATCTGATTATGGGACAATGGCATACTGCAGATCAGTATGATGGTCAAGTAAGGGAGATCACATATAGATCGCTTTGTAAAAGCCCAATGTGCCCACCTGACACAGCCATGACCGAGTGGCAGCATGCTGTTTTATCTCCAGACAAGAACAAGCTGGTATTTGAGACTGTACAACAAGCGCATGATGTTCCATTTGGCTCCAACTTTGAGGTATTAAATCTTTCTGAGTATCTTGCTATATAG 1518 41.37 FSEARLILAPKMMVETSLDFLFPSWWEIEVTVATSIFVISAYWFFTYRSGDDQVDRSRVEISRREAIDVNDKVISSYLTLWNNMLRNLELLAAKNLIGANLNGTSDPYAIITCGTQKRFSSMIPGSRNPMWGEEFNFSVDDLPVKINITIYDWDIIWKSAVLGSVTVPVENEGQTGAVWYTLNSPSGQVCLHLKTIKMPVNAPRDMSGYAGTNIRRRISIDKQVPTVVVVHSYSCALERSFLYHGRMFVSAWHICFHSNVFSKQMKVVIPLGDIDEIRRSQHAFINPAITITLRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAIRGLQRSVKSFHAMLEAEKKEKAESELRAHSSSIKGSKRHVKITNETVPINGNVPSFIKEEVLCDIYKGVFQCTAEQFFNLYLSDESTFTNSHRLARKDTNLIMGQWHTADQYDGQVREITYRSLCKSPMCPPDTAMTEWQHAVLSPDKNKLVFETVQQAHDVPFGSNFEVLNLSEYLAI 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6394522 6406591 + Bda001450.1 Bda13g00539 18670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00539 505 Pfam C2 domain 89 182 IPR000008 -
Bda13g00539 505 ProSiteProfiles VASt domain profile. 384 505 IPR031968 -
Bda13g00539 505 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 89 195 IPR035892 -
Bda13g00539 505 CDD C2 88 182 - -
Bda13g00539 505 Pfam VAD1 Analog of StAR-related lipid transfer domain 391 497 IPR031968 -
Bda13g00539 505 Gene3D - 221 335 IPR011993 -
Bda13g00539 505 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 13 496 - -
Bda13g00539 505 PRINTS C2 domain signature 125 138 IPR000008 -
Bda13g00539 505 PRINTS C2 domain signature 146 154 IPR000008 -
Bda13g00539 505 PRINTS C2 domain signature 101 113 IPR000008 -
Bda13g00539 505 ProSiteProfiles C2 domain profile. 63 182 IPR000008 -
Bda13g00539 505 SMART C2_3c 85 181 IPR000008 -
Bda13g00539 505 SMART gram2001c 214 281 IPR004182 -
Bda13g00539 505 Pfam GRAM domain 230 284 IPR004182 -
Bda13g00539 505 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 13 496 IPR044655 -
Bda13g00539 505 Gene3D C2 domain 79 198 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00539 - - - cit:102623446 738.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00824 Bda-Chr7:9715644 Bda13g00539 Bda-Chr13:6394522 8.04E-22 dispersed
Bda13g00145 Bda-Chr13:1936283 Bda13g00539 Bda-Chr13:6394522 2.76E-09 dispersed
Bda13g00539 Bda-Chr13:6394522 Bda01g01960 Bda-Chr1:55993401 4.32E-07 dispersed
Bda11g00393 Bda-Chr11:4266770 Bda13g00539 Bda-Chr13:6394522 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1323 . . . . . Bpe14g00790 . . . . . . Car06g01428 Car14g01266 . . . Bhi01g03681 . . . . . . . . . . . . . Cone14ag0618 Cone15ag0625 . Cone11ag0673 . . . . . . . Bda13g00539 . . . . . Cmo06g01677 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003689 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 0 7 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00539 Bda_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0