Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00540 ATGATTGTGAGCTCTATCTGCAATGCAGGCGCCAGATTATCGGGAGAAGAAGTGATGGAGATTGGGAAAATGATGGAACACAAGAGATGTCCTTACTCTGCTGATGAAAGTAGTCTCACTTCTCTTACAACGAAACGAAAAAAGGTCGATTTTTCTATCTCCTCTAAGGAGAGAAAAGAGAAGCTTGGTGAACGAATTAACGCATTGCAGCAGCTTGTTTCTCCATATGGAAAGACGGATACAGCTTCTGTTCTTCTCGAAGCTATGGAATACATTCAGTTTCTCCACGATCAAGTTAAGGTTTTGAGTGCTCCATACCTTCAAAGTTCGCCAATGGCAAAGAATAATATTCAGGAACTGGAGCTCTGTAGCTTGAGAAGTAGGGGTTTGTGCATTGTTCCAATTTCTTGCACTGTCGGAGTTGCTCGAAGCAATGGTGCAGACATCTGGGCTCCAGCCAAGTCAACTTCGCCGAAATTTGACAAGTCGATCTCGCAATTCCAATGA 507 43.39 MIVSSICNAGARLSGEEVMEIGKMMEHKRCPYSADESSLTSLTTKRKKVDFSISSKERKEKLGERINALQQLVSPYGKTDTASVLLEAMEYIQFLHDQVKVLSAPYLQSSPMAKNNIQELELCSLRSRGLCIVPISCTVGVARSNGADIWAPAKSTSPKFDKSISQFQ 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6409167 6412220 - Bda001451.1 Bda13g00540 18671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00540 168 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Bda13g00540 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 110 IPR036638 GO:0046983
Bda13g00540 168 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 12 152 - -
Bda13g00540 168 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 152 - -
Bda13g00540 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Bda13g00540 168 Gene3D - 43 121 IPR036638 GO:0046983
Bda13g00540 168 SMART finulus 52 101 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00963 Bda13g00540 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00963 Bda-Chr3:8714799 Bda13g00540 Bda-Chr13:6409167 1.89E-38 dispersed
Bda13g00540 Bda-Chr13:6409167 Bda15g00841 Bda-Chr15:12886514 1.35E-34 dispersed
Bda13g00540 Bda-Chr13:6409167 Bda12g00875 Bda-Chr12:39446790 1.06E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00540 - - zju:107407179 248.44