Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00541 GCTATGACATATTCCAATCCGCTTACCTTTCTTTTGACCTTTCTGTCAGTTCGGGGTCCAGAAGGGTTCTCCTCTTGGGACGGCCCTCCCTTTATCAATGGACAGCCCAGGATCAAGCGTGAAAACGTTCCTTGCACTAATGCTAAATTTAGTGAAGATGGGTCCAGACTAATGGTTACAAAATCTGATTCTGCTATCAGCATCTATGATTGCAGCACTTTCCAGGAGATTCGGTCCTTTCAAGTTCCCAGCTTGATTGCTGCCTCATTGTCCCCCTGTGGGACTTATCTTCAAACCTTTAAGAAATCATCAACACCTCAGGAAAAGAACGTAGTATTGTGGAAGACGGGAACAGGTGATGCTGTTTATCACCAATTCCAAAAGAACATGACAAAAACAACATGGCCTTCGATTCGATTCAGCGATGATGAAGCCGTTGCATGTCGTATGGCAACCAATGAAATACAATTCTTTGATGCTCTAGATTTTTCCATAGGAGTTACATACCGGCTTAAAATCCCTGGGGTGGCTGCAATTGAGCTCTCCAAGACACCTGGATCCCATGTTGCAGCATATGTTCCTGAGTCTAAGGGAGTTCCTGCCAGTGTGCAGATATTTTCTTGTGCTAAAGATTCACAAAGTCTTCCTCTTGCTCGTCGGAGTTTTTTCCGCTGCTCAACTGTGCAATTGAATTGGAATTATGGCTCTACTGGACTTCTGGTTACTGTGCAATCAGATGTTGATAAAACAAACCAGAGTTACTATGGAGAGTCAAAGCTAAACTACTTAACTACTGATGGAACTCATGAAGGACTTGTACCACTTCGTAAAGAGGGGCCTGTTCACGATGTTCAATGGTCATATAATGGTGCAGAGTTTGCTGTTGTTTATGGGTTCATGCCTGCTAAAGCGACTGTGTTTGACAAGAAGTGCAACCCTCTACTTGAGCTTGGCATTGGTCCTTATAATACTGTCAGATGGAATCCAAAAGGAAAATTTCTGTGTTTGGCTGGTTTTGGGAACTTACCTGGTGACATGGCCTTTTGGGATTACGTGGAGAAAAAACAAGTTGGAACTACTAAGGCTGAATGGTCTGTAACCAGTGAATGGTCCCCATGTGGACGCTATTTCATGACTGCCACAACAGCTCCAAGGCTACAAGTCGACAATGGGATAAAAATTTTCCATCACAATGGGTCTTTGTTCTTCAAGAAAATGTTCGACAAGTTATTTCAGGCTGATTGGAAGCCGGAGTCATCTGATAAGTTTGGAGACATTACTGAACTTATAAAGTCTATTGATTCGCTAAAAGTTGAAGAAATTAGTCCTCAAGGACAAGGGTCAAAATCTTCACAATCCTCAGCTAAAGCCGTTGCTGCCAGTGCCAACCCTCCTGCTCAAAAGCCGGCTGCTTATCGTCCTCCTCATGCAAAAAATGCTGTTTCTATTCAAGCAGAGCTGTTTGGAGAAGGGCCGAAAGAAGCAATGAGCAAGAATGCATTGAGGAATAAGAAGAAAAGGGAGAAACAGAAGGAGAAAAAGGGTGGTGAAGCTACTTCAACAGGATCTGATGCATGA 1578 43.35 AMTYSNPLTFLLTFLSVRGPEGFSSWDGPPFINGQPRIKRENVPCTNAKFSEDGSRLMVTKSDSAISIYDCSTFQEIRSFQVPSLIAASLSPCGTYLQTFKKSSTPQEKNVVLWKTGTGDAVYHQFQKNMTKTTWPSIRFSDDEAVACRMATNEIQFFDALDFSIGVTYRLKIPGVAAIELSKTPGSHVAAYVPESKGVPASVQIFSCAKDSQSLPLARRSFFRCSTVQLNWNYGSTGLLVTVQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYNGAEFAVVYGFMPAKATVFDKKCNPLLELGIGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVEKKQVGTTKAEWSVTSEWSPCGRYFMTATTAPRLQVDNGIKIFHHNGSLFFKKMFDKLFQADWKPESSDKFGDITELIKSIDSLKVEEISPQGQGSKSSQSSAKAVAASANPPAQKPAAYRPPHAKNAVSIQAELFGEGPKEAMSKNALRNKKKREKQKEKKGGEATSTGSDA 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6418178 6421941 + Bda001452.2 Bda13g00541 18672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00541 525 MobiDBLite consensus disorder prediction 440 525 - -
Bda13g00541 525 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 15 519 IPR011387 GO:0003743|GO:0006413
Bda13g00541 525 PIRSF Transl_init_eIF2A 12 524 IPR011387 GO:0003743|GO:0006413
Bda13g00541 525 Gene3D - 26 193 IPR015943 GO:0005515
Bda13g00541 525 MobiDBLite consensus disorder prediction 440 460 - -
Bda13g00541 525 Pfam Eukaryotic translation initiation factor eIF2A 220 413 IPR013979 -
Bda13g00541 525 SUPERFAMILY DPP6 N-terminal domain-like 42 396 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00541 K15026 EIF2A; translation initiation factor 2A - jre:108982788 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01471 Bda-Chr1:50635995 Bda13g00541 Bda-Chr13:6418178 3.72E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1319 . . . . . Bpe14g00787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012865 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00541 Bda_Chr13 FPKM 1.255226 0.902911 20.632235 16.805918 168.74324 158.715347 148.145782 4.639133 3.414809