Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00542 ATGGCTTTGAGAGGGGCATGGCAGCTTAAGAAGCTGATTGTCAGCTATTGTGATTGGGGAGGAAGTAGTAAAGGTATCAGGGCGTTTATGGAATCACAACTACCAGCATTTAAAGAGAAAAATTCTCAACTAGAGGTGATTACTGAGCTTAATCGGGGACAGCATCCAAATTTACAAGGCTTCTACAAAAACAAAAACCAACGGGTTGTGTGTGTGAAGAACTTGGACCCAGATGAGATATTACTTCAAGCAACAAGACTGAGGAATTCATTGGGAAGAAAGGTGGTGAAACTGAAGGCTCGTCATATAACAAAACACCCCAGCGTGCAAGGAACATGGACTACGGAAGTTCAATTTTGA 360 42.22 MALRGAWQLKKLIVSYCDWGGSSKGIRAFMESQLPAFKEKNSQLEVITELNRGQHPNLQGFYKNKNQRVVCVKNLDPDEILLQATRLRNSLGRKVVKLKARHITKHPSVQGTWTTEVQF 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6422864 6424981 - Bda001453.1 Bda13g00542 18673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00542 119 Pfam Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain 26 76 IPR007741 -
Bda13g00542 119 PANTHER 39S RIBOSOMAL PROTEIN L43 1 118 IPR039927 GO:0003735|GO:0032543
Bda13g00542 119 Gene3D Glutaredoxin 1 118 - -
Bda13g00542 119 SUPERFAMILY Thioredoxin-like 8 90 IPR036249 -
Bda13g00542 119 SMART L51_S25_CI_B8_2 18 91 IPR007741 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00542 K17424 MRPL43; large subunit ribosomal protein L43 - csin:114285291 216.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00542 Bda-Chr13:6422864 Bda15g00543 Bda-Chr15:8491891 5.93E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1318 . . . . . Bpe14g00786 . . . . . . Car06g01426 . . . Cpe03g01210 . . . . . . . . . . . . . . Cone14ag0622 Cone15ag0630 . . . . . . . . . Bda13g00542 . . . . . Cmo06g01674 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006244 2 0 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00542 Bda_Chr13 FPKM 0.0 0.0 0.267623 0.072605 1.346342 1.863251 1.504578 0.0 0.0