Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00549 GGCGAAAACTGGGAAATAGGATTTTCAGAGCAAGGATTGTTAGGGAACTCTGAACAAGAAGAAGACATATCTTCAGCTTGCGTGGAAGACAAAATGCCACCTTTACAGATGTTTCAGGAATCTCCGCTATTGTTGCCCTTTAAAGAGCTCGGATTTCAAACTTTACTGAAATTGCAGCATTTCAAGAAGCCATGGGAGATGGGCGAGCTGAAATTGGAAGAAAAGATTCAAACTTTCGAACCAGATAGCTGTTTAACCCTAGATTCGCATTCCCCCATCAAATCAGAAAGCACTAAAATCAGATCAAAGGGAGAGGGGAATAGTGTTAGAGAAGGAAGAAACAGTTCCAAACAGACCAAGCTGGGTAAATCTGCAGTTCTAGTGAGAGAAAGAAGAAAGAGAAAGAGAGGGAAGCCATTGAAGGACAATGAAGAAGTAGAGAACCAAAGAATGAAACACATTGCAGTCGAGAGAAATCGGAGACGACAAATGAACGATCATCTCAATGTTCTTCGCTCTCAAATCCCCCCGTCTTACATCCAAAGAGGTGATCAAGCGTCAATCATCGGAGGAGCAATAAACTTTGTGAAAGAGCTCGAGCAACTCCTTCATTCTCTTGAATCACAACGAAGAACAAGAAACCCAGAAAGCAGCTCTGCAGAAAACCAGTCTGCAGTTACATCGTCTTCTCCCTCCGCCATAGCCATGGCTTCCAACGGAAGTGATTCTAGCAGGAAAGCGGCAGACGTCGAAGTGACAGTCATTCAAACGCAAGTAAATTTGAAAGTTCAGTGCGAGAGAAAGCCGAGACAGTTGTTGGAAGCCATTGTTGCACTAGAAAAGCTTAAGCTCAGTGTTCTTCACCTTAACGTCACCACCTCTCAATCTACAGTTCTTTATTCCTTCAATCTCAAGATAGAGGATGAATGTGAACTCAGATCAGCGGACAAGATTACAGGATCAGTGCATCAAATTTTCAGCTACATCAACGGTTAG 996 43.07 GENWEIGFSEQGLLGNSEQEEDISSACVEDKMPPLQMFQESPLLLPFKELGFQTLLKLQHFKKPWEMGELKLEEKIQTFEPDSCLTLDSHSPIKSESTKIRSKGEGNSVREGRNSSKQTKLGKSAVLVRERRKRKRGKPLKDNEEVENQRMKHIAVERNRRRQMNDHLNVLRSQIPPSYIQRGDQASIIGGAINFVKELEQLLHSLESQRRTRNPESSSAENQSAVTSSSPSAIAMASNGSDSSRKAADVEVTVIQTQVNLKVQCERKPRQLLEAIVALEKLKLSVLHLNVTTSQSTVLYSFNLKIEDECELRSADKITGSVHQIFSYING 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6468389 6469554 + Bda001461.1 Bda13g00549 18680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00549 331 MobiDBLite consensus disorder prediction 212 242 - -
Bda13g00549 331 CDD bHLH_AtFAMA_like 151 230 - -
Bda13g00549 331 PANTHER TRANSCRIPTION FACTOR BHLH70 15 330 - -
Bda13g00549 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 217 IPR036638 GO:0046983
Bda13g00549 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 199 IPR011598 GO:0046983
Bda13g00549 331 MobiDBLite consensus disorder prediction 83 124 - -
Bda13g00549 331 Gene3D - 140 214 IPR036638 GO:0046983
Bda13g00549 331 MobiDBLite consensus disorder prediction 1 21 - -
Bda13g00549 331 MobiDBLite consensus disorder prediction 94 110 - -
Bda13g00549 331 Pfam Helix-loop-helix DNA-binding domain 149 200 IPR011598 GO:0046983
Bda13g00549 331 SMART finulus 154 205 IPR011598 GO:0046983
Bda13g00549 331 MobiDBLite consensus disorder prediction 207 242 - -
Bda13g00549 331 PANTHER MAX DIMERIZATION, MAD 15 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00549 - - - vvi:100248794 318.931
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00158 Bda13g00549 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00490 Bda-Chr13:5769953 Bda13g00549 Bda-Chr13:6468389 2.07E-55 dispersed
Bda13g00549 Bda-Chr13:6468389 Bda15g00775 Bda-Chr15:11598979 5.06E-20 dispersed
Bda11g00398 Bda-Chr11:4316949 Bda13g00549 Bda-Chr13:6468389 2.90E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1268 Blo01g00193 . . Bda08g00158 . . . Bma05g01166 . . . Cma14g01519 . Car14g01343 Sed12g0692 . Cpe03g01278 Bhi01g01188 Tan10g1201 Cmetu06g1782 . Hepe05g1300 . Lcy11g1259 . . . . . . . . . Cone18ag0851 . . . . . . . . Bda13g00549 Bpe05g00974 . . . . . Cmo14g01554 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005308 2 4 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16885 PF00010 HLH 2.30E-09 No_clan Bda TF