Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00559 ATTTATCCATTGTCGGAAAATATGGGAATTCAGATGGGATCATTAGACGAACCATCTAAACTTTACTTCGAAGATGAGAGCCTTGTCAGTCCTGCATCAGTAGCTGCAAAGAAACATTCTTTTCAGGATTCTTTACACATATCTTCATCTACTAGTAATAGGAAGACTTGGTTTTCTCAAGACATGGGGTGTAGGGTGATTGATAGTATCAAAATCGTCGTCTTCTCCACAAAAATCAACGTACTCATGCCATTTGGGCCTCTGGCAATCTTGGTTTATAACCTATCTGGCCATCATGGATGGGTCTTTCTCTTAAGCTTATTAGGGATTATACCTCTGGCTGAGAGATTGGGTTATGCAACTGAGCAGCTGGCTTGCTACACTGGACCCACAGTTGGAGGTCTTCTCAATGCTACTTTTGGAAATGCAACGGAATTGATAATATCCATTTACGCATTGAGGGAGGGGATGATACGTGTCGTTCAACAGTCATTACTCGGCTCGATTTTGTCAAACATGTTATTAGTGCTTGGATGTGCATTCTTTGCTGGTGGTCTCGTGTGTTCTGCTCGAGAACAGTTTTTCACTAAGTCTTCTGCTACCGTGAACTCTGGATTACTGCTAATGGCGGTCATGGGTCTTCTATTTCCAGCAGTCCTTCACTCCACACATACTGAATTGCATTTTGGAAAGTCTGAATTGGCACTTTCGAGGTTCAGTAGCTGTATTATGCTGGTGGCATATGCTGCATATCTTTTTTTTCAGTTGAGAAGCGATCAAAATCGTTACATCTCAGTTGACGAGGCTGAAGTTCAGGCTGAAGAGAGTCCAGATGATGATGAGGTACCTGAGATCTCTAAATGGGAGTCAATAATTTGGTTGACTATTTTGACATCATGCATTTCAGTCCTCTCAGAATATCTAGTAAATGCCATAGAGGGAGCATCAGTGGCAATGAAAATACCGGTAGCATTCATTAGCGTGATTCTGCTCCCGATTGTCGGTAATGCTGCCGAGCATGCAGGTGCTGTAATGTTTGCCATGAAAGACAAGCTTGACATATCTTTGGGAGTTGCCATTGGATCATCAACTCAGATATCTATTTGTTTTCTTTTTCGGGTTCTGCAGATTCCGTTTTGTGTTGTTGTTGGATGGGTCATGGGACGTCCGATGGACTTAAATTTTCAACTTTTCGAGACAGCCACACTTCTCATGACTGTCATAGTTGTAGCCTTTATGCTTCAGGATGGAACTTCTAATTACTTCAAAGGACTAATGCTTATTCTTTGCTACCTCGTTGTAGCAGCAAGTTTTTTTGTACATATAGATCCTTCTTCAGTTGGTTAG 1347 41.72 IYPLSENMGIQMGSLDEPSKLYFEDESLVSPASVAAKKHSFQDSLHISSSTSNRKTWFSQDMGCRVIDSIKIVVFSTKINVLMPFGPLAILVYNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGPTVGGLLNATFGNATELIISIYALREGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVCSAREQFFTKSSATVNSGLLLMAVMGLLFPAVLHSTHTELHFGKSELALSRFSSCIMLVAYAAYLFFQLRSDQNRYISVDEAEVQAEESPDDDEVPEISKWESIIWLTILTSCISVLSEYLVNAIEGASVAMKIPVAFISVILLPIVGNAAEHAGAVMFAMKDKLDISLGVAIGSSTQISICFLFRVLQIPFCVVVGWVMGRPMDLNFQLFETATLLMTVIVVAFMLQDGTSNYFKGLMLILCYLVVAASFFVHIDPSSVG 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6542330 6544927 + Bda001472.1 Bda13g00559 18690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00559 448 Gene3D - 278 440 IPR044880 -
Bda13g00559 448 Gene3D - 130 272 IPR044880 -
Bda13g00559 448 Pfam Sodium/calcium exchanger protein 101 256 IPR004837 GO:0016021|GO:0055085
Bda13g00559 448 Pfam Sodium/calcium exchanger protein 291 436 IPR004837 GO:0016021|GO:0055085
Bda13g00559 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 8 448 IPR004713 GO:0006812|GO:0008324|GO:0016021
Bda13g00559 448 TIGRFAM caca2: calcium/proton exchanger 69 439 - -
Bda13g00559 448 TIGRFAM cax: calcium/proton exchanger 83 439 IPR004798 GO:0006816|GO:0015369
Bda13g00559 448 PANTHER VACUOLAR CATION/PROTON EXCHANGER 8 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00159 Bda-Chr1:22864235 Bda13g00559 Bda-Chr13:6542330 1.52E-116 dispersed
Bda04g00956 Bda-Chr4:59242592 Bda13g00559 Bda-Chr13:6542330 0 dispersed
Bda07g00432 Bda-Chr7:5540861 Bda13g00559 Bda-Chr13:6542330 0 dispersed
Bda09g00512 Bda-Chr9:6780845 Bda13g00559 Bda-Chr13:6542330 3.03E-08 transposed
Bda13g00559 Bda-Chr13:6542330 Bda06g00458 Bda-Chr6:6618326 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00559 K07300 - csv:101215915 654.825