Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00562 ATGGCAGAATGGTGTTCAGAAACGACATTCCTTCCAGATAATCAGTTTCCACCGTCTGATGAACAAGATCATGGTGCACCAACGAGCACTACATCTGTTTCAGATCAAAACAGGCTCCATAATTCTGTGACTGGAGTAAATATAGTCGAGGCAGATGTAGAAGCAGGAAGCTTCAAAGCTATGGCGGGCAGTGTTAAAAGCCCATCAATGGAGTCGTCGTCGTTAGGTGATGTTCAAAAAGTAGAGCGGGAGTTGACGGATGCTTTGTCTGCACTTGAGCAAACGTTCGTCGTCTCCGATGCTACAAAACCTGATTGCCCCGTTGTTTTCGCCAGCACTGGGTTCTTCGCCATGACTGGCTATTCCTCAGATGAGATCATCGGTCGAAACTGCCGGATTCTTCAGGGAGCAGACACAGATGAATATGAAGTTGACAAAATTCGAAATGCAGTGAGGAATGAGAGAAGCTACTGCGGCAGGCTCTTGAACTACAAGAAGAATGGTTCTCCTTTCTGGAATCTTCTCACTATAACTCCAATTAAAGATGAAAATGGCAAAACCGTCAGATTTATCGGAATGCAGGTTGAGGTCAGCAAACACACAGAAGGAGTGTATGACAAGGCGTTACGTCCAAACGGATTGCCCCAGTCATTAATCCGCTATGATGCTCGACAGAAAGAGAAGGCTCTGGACTCCATTGAAGAAGTTGTCCAGACTGTTAAACATCCACAATCTCTCTCACGAGCTACCAGCCACAGTTGTATATTCAAACGCCAAGCATCAGAGAAATTCAAATTTGACTATGCCGAAGCTATTAGTACGCCTGGTAGGCACACTTTTCATTTGGATCCTAAAGTTGATCAGTCTCATTTAGGTGCATTGGATGATACAACAAAGAAATCTGGATTAACAGGTCGGCTTTCCTCGATGGGTTTCAAAGGGAGGTCTATCAGCACTGGGGGGAGGCATGAGCAAAAGATAACTATTGAACCAGAGATTTTGATGACTAAAGAAATAGAGGACATTGACAGTTGGGATAATAATGAAAGAGAGAGGGATAGACGCCAAGGAATCGATTTGGCAACCACATTGGAACGAATTGAGAAAAATTTTGTGATTACTGATCCTAGAATTCATGACAACCCAATTATCTTTGCATCTGATAGCTTTCTTGAATTGACCGAATATACACGCGAAGAAACTTTAGGAAGAAATTGTCGATTTCTTCAAGGACCCGAAACCGATAAAGCCACTGTTTTGCAGATAAGAGAAGCTATTATTGAAGAGAAGGAAATCACAGTTCATCTAATAAACTACACAAAAACTGGTAAAAAGTTTTGGAATTTATTCCACTTACAGCCCATGCGGGACCAAAAGGGTGATCTGCAGTACTTCATTGGTGTCCAGCTAGATGAAAGTAATAACATGGAAACTCTGCAAAAGCGTCTTTCAGAGAGAACAGAATTACAAAGTGCGATGTTGGTGAAAACAACGGCAGAAAATGTAGATGAGGCTGTCCGTGAACTTCCCGATGCCAATTTGAGACCAGAAGATTTATGGGCAATATATTCTAAACATGTCTTCCCAAAGCCCCACAAGAAGGATAGTTGCTCTTGGTTACCAATAAAAAAGATTACTCAACGAGGTGAAAATATTGGACTACAACATTTTAAACCCCTAAGGCCACTGGGTTGTGGAGATACCGGGAGTGTTCATTTGGTGCAGCTGGAAGGTTCTGGGGAACTTTATACTATTAAAGCAATGGACAAGGAAGCAATGTTGAACCGCAACAAGGTTCACAGAGCATGCATTGAAAGGGAAATTATCTCACATCTGGATCATCCTTTTCTTCCGACTTTGTATGCATCATTTCAGACTGCTACACACGTTTGTTTGGTAACAGACTTTTGCCCTGGTGGAGAGTTATATGCATTGCTTGAAAAGCAACCATCGAAAACTTTTAAAGAAGAATCTGCGAGATTCTACGTGGCTGAAGTTGTTATTGCGTTGGAATATCTTCACTGTTTAGGAATTATTTATCGAGACCTGAAGCCTGAAAATATTTTAGTTCAAAAGGATGGTCATATTGTATTAGCTGATTTTGATTTGTCATTTTTGACTTCCTCTAAGCCTCAGGCCATAAAGGTTCCTTCATCAGCCAAACGGAGATCAAAGAATGAACCACCACCAGCATTTGTTGCAGAACCAATTTCACACTCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAGTTATTGGTGGTGAAAGCCACACAAGCGCTATTGATTGGTGGACTCTGGGTATACTACTGTATGAGATGCTCTATGGCCGGACACCTTTCCGGGGAAAGAACAGGCAGAAGACATTTACCAACATATTGCAGAAAGAACTCACCTTCTCGAGTAGTATTCCGGTAAGCCTTCAGGCGAGGCAGATGATCAATGGTTTGCTCCAGAGAGACTCAACCTCTCGTCTAGGCTCAAAAACCGGCGCTAATGAAATCAAACAACACCCCTTTTTTCGGGGAATCAATTGGTCTTTGATCCTATGCATGACACCGCCCCCACTGGAAGTTCCTCTTCAGTTGATCGAAAAGGATCCAAACGCCAAGGACATAAAGTGGGGAGATGATGGCGTGCTTACTAATTCAATCAACTTGGAGATTTTCTGA 2679 42.4 MAEWCSETTFLPDNQFPPSDEQDHGAPTSTTSVSDQNRLHNSVTGVNIVEADVEAGSFKAMAGSVKSPSMESSSLGDVQKVERELTDALSALEQTFVVSDATKPDCPVVFASTGFFAMTGYSSDEIIGRNCRILQGADTDEYEVDKIRNAVRNERSYCGRLLNYKKNGSPFWNLLTITPIKDENGKTVRFIGMQVEVSKHTEGVYDKALRPNGLPQSLIRYDARQKEKALDSIEEVVQTVKHPQSLSRATSHSCIFKRQASEKFKFDYAEAISTPGRHTFHLDPKVDQSHLGALDDTTKKSGLTGRLSSMGFKGRSISTGGRHEQKITIEPEILMTKEIEDIDSWDNNERERDRRQGIDLATTLERIEKNFVITDPRIHDNPIIFASDSFLELTEYTREETLGRNCRFLQGPETDKATVLQIREAIIEEKEITVHLINYTKTGKKFWNLFHLQPMRDQKGDLQYFIGVQLDESNNMETLQKRLSERTELQSAMLVKTTAENVDEAVRELPDANLRPEDLWAIYSKHVFPKPHKKDSCSWLPIKKITQRGENIGLQHFKPLRPLGCGDTGSVHLVQLEGSGELYTIKAMDKEAMLNRNKVHRACIEREIISHLDHPFLPTLYASFQTATHVCLVTDFCPGGELYALLEKQPSKTFKEESARFYVAEVVIALEYLHCLGIIYRDLKPENILVQKDGHIVLADFDLSFLTSSKPQAIKVPSSAKRRSKNEPPPAFVAEPISHSNSFVGTEEYIAPEVIGGESHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFTNILQKELTFSSSIPVSLQARQMINGLLQRDSTSRLGSKTGANEIKQHPFFRGINWSLILCMTPPPLEVPLQLIEKDPNAKDIKWGDDGVLTNSINLEIF 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6565897 6594118 + Bda001475.1 Bda13g00562 18693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00562 892 CDD STKc_phototropin_like 555 867 - -
Bda13g00562 892 Pfam PAS domain 379 471 IPR000014 -
Bda13g00562 892 Pfam PAS domain 102 198 IPR000014 -
Bda13g00562 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672|GO:0006468
Bda13g00562 892 ProSiteProfiles PAC domain profile. 155 209 IPR000700 -
Bda13g00562 892 Pfam Protein kinase domain 559 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00562 892 Gene3D Transferase(Phosphotransferase) domain 1 641 853 - -
Bda13g00562 892 MobiDBLite consensus disorder prediction 8 39 - -
Bda13g00562 892 ProSiteProfiles PAC domain profile. 430 484 IPR000700 -
Bda13g00562 892 SMART pac_2 158 200 IPR001610 -
Bda13g00562 892 SMART pac_2 433 475 IPR001610 -
Bda13g00562 892 SUPERFAMILY PYP-like sensor domain (PAS domain) 372 471 IPR035965 -
Bda13g00562 892 TIGRFAM sensory_box: PAS domain S-box protein 108 200 IPR000014 -
Bda13g00562 892 TIGRFAM sensory_box: PAS domain S-box protein 380 471 IPR000014 -
Bda13g00562 892 ProSiteProfiles PAS repeat profile. 81 154 IPR000014 -
Bda13g00562 892 SMART pas_2 83 152 IPR000014 -
Bda13g00562 892 SMART pas_2 358 428 IPR000014 -
Bda13g00562 892 PANTHER BNAA02G07840D PROTEIN 67 891 - -
Bda13g00562 892 PANTHER FLIPPASE KINASE 1-RELATED 67 891 - -
Bda13g00562 892 SMART serkin_6 557 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00562 892 CDD PAS 108 197 IPR000014 -
Bda13g00562 892 Gene3D PAS domain 95 252 - -
Bda13g00562 892 SUPERFAMILY Protein kinase-like (PK-like) 534 869 IPR011009 -
Bda13g00562 892 SUPERFAMILY PYP-like sensor domain (PAS domain) 102 194 IPR035965 -
Bda13g00562 892 ProSiteProfiles Protein kinase domain profile. 557 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00562 892 Gene3D PAS domain 344 509 - -
Bda13g00562 892 CDD PAS 371 471 IPR000014 -
Bda13g00562 892 MobiDBLite consensus disorder prediction 1 39 - -
Bda13g00562 892 Gene3D Phosphorylase Kinase; domain 1 556 640 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00756 Bda-Chr5:56066818 Bda13g00562 Bda-Chr13:6565897 1.44E-28 dispersed
Bda09g01486 Bda-Chr9:46684330 Bda13g00562 Bda-Chr13:6565897 0 dispersed
Bda10g00634 Bda-Chr10:40377022 Bda13g00562 Bda-Chr13:6565897 1.80E-70 dispersed
Bda13g00562 Bda-Chr13:6565897 Bda01g00389 Bda-Chr1:29931717 1.36E-112 dispersed
Bda03g01448 Bda-Chr3:52064923 Bda13g00562 Bda-Chr13:6565897 1.54E-59 transposed
Bda13g00562 Bda-Chr13:6565897 Bda06g00455 Bda-Chr6:6582510 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70003 PF00069 Pkinase 1.20E-60 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00562 K20715 - mnt:21396926 1217.99