Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00587 ATGGGTCTCTCAAGCCTTCCAACTCCATCTGAGGGATTACTGTCAATATTGATACAAACAGCTTTGTCTATTTCCTTCTTCAAAAGCATAGTCGGTTCAATTCTCCATGTGATCAGCATCTTGTCATCATCCTCTTCAAATTTCCCCACAGACTATGTTGAAGTTGAAATATCTTCGGACTACATGGATTGTCATCTTGGTCATTCCGATATCTACATCGAGGAATTCCACCGGAGGGTGCCAGCCGTTCGATTCGACAAAGCGTGCAAAAGTCGGGCGCATGAGCTGAGCTGTTCAGTTTGCTTGACACAGTTTGAGCCTGAATCAGAGATCAACCTGTTATCTTGTGGCCATATTTTTCACCAGGTGTGCTTGGAGAAGTGGCTAGACTACAGGAACACTACCTGCCCTATGTGTAGGACTCCATTACTGCCTGAAGAAGAGAGATCTTCAGTTTGGTAA 462 44.59 MGLSSLPTPSEGLLSILIQTALSISFFKSIVGSILHVISILSSSSSNFPTDYVEVEISSDYMDCHLGHSDIYIEEFHRRVPAVRFDKACKSRAHELSCSVCLTQFEPESEINLLSCGHIFHQVCLEKWLDYRNTTCPMCRTPLLPEEERSSVW 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6910938 6911399 + Bda001505.1 Bda13g00587 18718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00587 153 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Bda13g00587 153 PANTHER - 1 150 IPR044249 -
Bda13g00587 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 145 IPR013083 -
Bda13g00587 153 SMART ring_2 98 139 IPR001841 -
Bda13g00587 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 150 - -
Bda13g00587 153 SUPERFAMILY RING/U-box 97 145 - -
Bda13g00587 153 SMART ringv_2 97 140 IPR011016 GO:0008270
Bda13g00587 153 Pfam Ring finger domain 97 140 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda13g00587 Bda14g00663 CCT
Bda06g00433 Bda13g00587 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00587 Bda-Chr13:6910938 Bda14g00663 Bda-Chr14:4991286 3.37E-45 dispersed
Bda11g01290 Bda-Chr11:13602938 Bda13g00587 Bda-Chr13:6910938 2.86E-12 transposed
Bda13g00587 Bda-Chr13:6910938 Bda06g00433 Bda-Chr6:6408731 6.64E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00587 K16285 - tcc:18612514 173.711