Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00590 ATGGCGGACTCGGATAATGAATCGGGAGGGCCTAACTGCAACGCGAATAGCGAGCACTCGAGGGAGCAAGACAGGTTCTTACCCATAGCCAACGTGAGCAGAATAATGAAGAAAGCTCTACCAGCAAACGCCAAGATCTCGAAAGACGCAAAAGAAACAGTGCAAGAATGTGTATCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGTCAGAGAGAGAAAAGGAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACTACTCTAGGATTCGAAGAGTACGTGGAGCCTCTGAAAGTCTATCTACAAAAGTACAGAGAAACAGAAGGAGAGAAGAGCTCAGTCGGACGACAGGGTGAAAAAGAGGGCGGCGGAGGTGGGTCCAGCTCGGGCGGGACTGATGCCGCCGGATCTGGAAGTGGAGGTGGCTTTAATGGAATGGGGGCGATGTACGGTGGGATGATGATGGGTCATCATCAGTCGCACGTGTACGGTCTAGGTGGATATCATCATATGGGTGGTGGTGCTCAGAAGGGTGGAACCGGCGGTCAGGGCTCTGGCAACCGGTGA 582 53.09 MADSDNESGGPNCNANSEHSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRETEGEKSSVGRQGEKEGGGGGSSSGGTDAAGSGSGGGFNGMGAMYGGMMMGHHQSHVYGLGGYHHMGGGAQKGGTGGQGSGNR 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6927795 6928376 - Bda001508.1 Bda13g00590 18721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00590 193 MobiDBLite consensus disorder prediction 1 24 - -
Bda13g00590 193 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 170 - -
Bda13g00590 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Bda13g00590 193 MobiDBLite consensus disorder prediction 112 143 - -
Bda13g00590 193 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Bda13g00590 193 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Bda13g00590 193 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Bda13g00590 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 170 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bda13g00590 193 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda13g00590 193 MobiDBLite consensus disorder prediction 1 17 - -
Bda13g00590 193 SUPERFAMILY Histone-fold 23 125 IPR009072 GO:0046982
Bda13g00590 193 Gene3D Histone, subunit A 13 138 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00753 Bda-Chr3:6355371 Bda13g00590 Bda-Chr13:6927795 7.76E-59 dispersed
Bda05g00681 Bda-Chr5:55134536 Bda13g00590 Bda-Chr13:6927795 3.14E-45 dispersed
Bda07g00410 Bda-Chr7:5279521 Bda13g00590 Bda-Chr13:6927795 2.76E-66 dispersed
Bda08g00966 Bda-Chr8:19048930 Bda13g00590 Bda-Chr13:6927795 3.42E-55 dispersed
Bda12g00962 Bda-Chr12:40824349 Bda13g00590 Bda-Chr13:6927795 3.80E-70 dispersed
Bda13g00590 Bda-Chr13:6927795 Bda15g00184 Bda-Chr15:4420974 2.38E-59 dispersed
Bda14g01019 Bda-Chr14:8589455 Bda13g00590 Bda-Chr13:6927795 2.33E-59 transposed
Bda13g00590 Bda-Chr13:6927795 Bda06g00410 Bda-Chr6:6267634 6.52E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16889 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00590 K08065 - csv:101219076 220.32