Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g00590 | ATGGCGGACTCGGATAATGAATCGGGAGGGCCTAACTGCAACGCGAATAGCGAGCACTCGAGGGAGCAAGACAGGTTCTTACCCATAGCCAACGTGAGCAGAATAATGAAGAAAGCTCTACCAGCAAACGCCAAGATCTCGAAAGACGCAAAAGAAACAGTGCAAGAATGTGTATCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGTCAGAGAGAGAAAAGGAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACTACTCTAGGATTCGAAGAGTACGTGGAGCCTCTGAAAGTCTATCTACAAAAGTACAGAGAAACAGAAGGAGAGAAGAGCTCAGTCGGACGACAGGGTGAAAAAGAGGGCGGCGGAGGTGGGTCCAGCTCGGGCGGGACTGATGCCGCCGGATCTGGAAGTGGAGGTGGCTTTAATGGAATGGGGGCGATGTACGGTGGGATGATGATGGGTCATCATCAGTCGCACGTGTACGGTCTAGGTGGATATCATCATATGGGTGGTGGTGCTCAGAAGGGTGGAACCGGCGGTCAGGGCTCTGGCAACCGGTGA | 582 | 53.09 | MADSDNESGGPNCNANSEHSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRETEGEKSSVGRQGEKEGGGGGSSSGGTDAAGSGSGGGFNGMGAMYGGMMMGHHQSHVYGLGGYHHMGGGAQKGGTGGQGSGNR | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6927795 | 6928376 | - | Bda001508.1 | Bda13g00590 | 18721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g00590 | 193 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Bda13g00590 | 193 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 | 1 | 170 | - | - | |
Bda13g00590 | 193 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 26 | 90 | IPR003958 | - | |
Bda13g00590 | 193 | MobiDBLite | consensus disorder prediction | 112 | 143 | - | - | |
Bda13g00590 | 193 | PRINTS | CCAAT-binding transcription factor subunit A signature | 73 | 91 | - | - | |
Bda13g00590 | 193 | PRINTS | CCAAT-binding transcription factor subunit A signature | 54 | 72 | - | - | |
Bda13g00590 | 193 | PRINTS | CCAAT-binding transcription factor subunit A signature | 92 | 110 | - | - | |
Bda13g00590 | 193 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 170 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Bda13g00590 | 193 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 57 | 73 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Bda13g00590 | 193 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Bda13g00590 | 193 | SUPERFAMILY | Histone-fold | 23 | 125 | IPR009072 | GO:0046982 | |
Bda13g00590 | 193 | Gene3D | Histone, subunit A | 13 | 138 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00753 | Bda-Chr3:6355371 | Bda13g00590 | Bda-Chr13:6927795 | 7.76E-59 | dispersed | |
Bda05g00681 | Bda-Chr5:55134536 | Bda13g00590 | Bda-Chr13:6927795 | 3.14E-45 | dispersed | |
Bda07g00410 | Bda-Chr7:5279521 | Bda13g00590 | Bda-Chr13:6927795 | 2.76E-66 | dispersed | |
Bda08g00966 | Bda-Chr8:19048930 | Bda13g00590 | Bda-Chr13:6927795 | 3.42E-55 | dispersed | |
Bda12g00962 | Bda-Chr12:40824349 | Bda13g00590 | Bda-Chr13:6927795 | 3.80E-70 | dispersed | |
Bda13g00590 | Bda-Chr13:6927795 | Bda15g00184 | Bda-Chr15:4420974 | 2.38E-59 | dispersed | |
Bda14g01019 | Bda-Chr14:8589455 | Bda13g00590 | Bda-Chr13:6927795 | 2.33E-59 | transposed | |
Bda13g00590 | Bda-Chr13:6927795 | Bda06g00410 | Bda-Chr6:6267634 | 6.52E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16889 | PF00808 | CBFD_NFYB_HMF | 1.80E-27 | CL0012 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g00590 | K08065 | - | csv:101219076 | 220.32 |