Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00598 ACTTTGATGTCTTGTTCTTCCGGAGCTAAGAGTCTTCTCAAGCTTTCGAAGTTATTTGTGAAGATTCAAAGGTGGATTTTGATGGGAATGGCTCAGAATTGCAAGTTCTGTGTCTCTTGTGGAAAAGTATCAGCTGGGTTTAGGTTGAAGAAGGCGAAGGAGGATGGGAATGTCCATTCTTCGATAACAGGGTGGAAAAGAAAGGTTCTTGTTCTATGTGCTGTAGGTTTAGTTTTCATTTTCAGTATCTGTTTTTTCTGGAGTTCTTTCGATGGTTCGTGGACGTCTAAACAAAAGCCCTTGAGTTCATTCGGAGGCAAAACTGAAAACTTTCTGCAGCATTTCAATGTCAGCAATAATCACCTTCTGTTCCTTAGTTCTTTATTTGCCAAATCAGATCAGATAGTATCAATCCAATGTACCAAAGGTTCGAGTCCTGACATGCATATCAAAAATGGCATTTCTTGTGCTTTGAAGGTACTATCCTCAGAGGAGCTACTGGTCCGACATGATCAATTGATCGAGGAGCACTTAAAATCAAATGATCAATGCCCAATTCTCGGTGAGAAGATCCCAAATTACTTTGATCAGTCTCTCTCTCACAATAAGAGAATGTTAGCTTCAGATTCTTTGATTTCGTCAAAACCTACTGATATTCACTCTTTCGGAAAGAAGATCTTGCAGACAAGGGGATTCCCGAGCTGTGCAAAAGATTGTTGCGAAAGTTTATGTAGTTTGGTAAAGGGAAGCTTGTGGGTGATTTTTGGAGTGATTATTTATCAGATGATCCCTTGTTTTGACTTAAAATTGTGGTGGATTCAAAATGAACTGGTAGACCAAAATATTCAGCAACAGCCAGTGGCTAATCAGGTGTCGTCCCAGCAAAAGCAGCAGAAGGTGTTTCCTCAGCAAGTACAGCCGCATCATGCCAAGAATCCCCCTAAAGGGGCTGGAAAGTGGAGGAAGAAGCTTCTACTACTGTTTGTATTACTCGGTGTCATTACTTCGGTTTGGTTATTTTGGGATTTAAATAGTAAAATTAATTTGAGGAGAGAAGAGACACTTGCCAACATGTGTGATGAACGGGCTAGAATGTTGCAGGACCAGTTTAATGTGAGCATGAACCATGTTCATGCCTTGGCTATTCTTGTCTCAACCTTTCACCATGGGAAACACCCTTCTGCCATGAATCAGAAAATATTTGGTGAATATACGGAAAGAACGGCTTTTGAGAGACCTTTAACCAGTGGTGTTGCATATGCTTTAAGAGTGAACCACTCAGAAAGAGATATATTTGAGAAAAGACATGGGTGGACAATAAAGAAAATGGAAACCGAGGACCAGACGCTGGTTCGAGATTGTATCCCAGAAAGTTTGGACCCTGCACCTATTCAAAAGGAATATGCACCTGTAATATTTTCCCAAGAAACTGTCTCCCATATTGTCTCTATTGACATGATGTCTGGAAAGGAAGATCGTGAAAACATATTGCGGGCCAGAGCATCTGGGAAGGGAGTACTTACATCGCCTTTTAAGCTACTGAAATCCAATCATCTTGGTGTTGTTCTAACATTTGCTGTCTATAATAAGGAGCTTCCTCCCAATGCTACACCAGATCAACGTGTTGAAGCTACTGTCGGGTATCTTGGGGCATCTTATGATGTACCATCTCTGGTGGAGAAGCTTCTGCACCAGCTTGCCAGCAAACAGACAATCGTTGTGAATGTATACGATACGACGAATGATTCTTCTCCCATAAAGATGTACGGTTCAGATTTCACCGATACGGGGCTACTGCAAGTTAGTAACCTTGATTTTGGTGATCCACAGAGGAAGCATGAGATGCATTGTAGATTCAAACAAAAACCAACCTTACCGTGGACGGCAATAAATGCATCAGTGGCAGTCCTTGTCATTACTCTCCTAGTCGGCCATATATTTCACGCTGCTATTTGTCAAATTGCAGAAGTTGAGAACGATTATCGGGTGATGACGGAGCTCAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCCCATGAGATCAGGACGCCAATGAATGGGGTATTAGGAATGCTAAAATTGCTGATGGACACGGACCTCGATGAAGAACAACTGGACTACGCTTATACTGCCCATGACAGTGGAGAAAGTCTAATATCTCTTATAAATGAGGTCCTCGATCAGGCTAAGATAGAATCAGGCAGGCTTGAACTTGAATCTGTACCTTTTGATCTTCGAGCTGTACTTGACAATGCTCTCTCACTTTTTTCTGGCAAATCTAATGAAAAGCGGATTGAGCTTGCTGTTTATGTCTCTTCCCTGGTACCTGAAGTTGTGATTGGTGATCCTGGCCGATTCAGGCAGATAATCACAAATCTTGTTGGAAATTCTATTAAGTTTACTCATAACAAAGGACATATCTTCATCTCAGTGCATCTGGCAGATGAAGTTTTGGGTCCACTTGAACATATGGATAAAGTTCTGAGACAAGGGCTGAGTTTAGTTAAAGACACATCGAGCAATACCTATAATACGCTCAGCGGGTTTCCTGTCGTTAATAGATGGAAAAGCTGGAAACTTTTCAAGAATTTTTGCAGGACAGATGCTACTGAGCATTCGGATATGATCAAATTATTGGTTACTGTTGAGGATACAGGTGTGGGGATTGCTCTAAACGCTCAAAGCCGAATCTTCACACCTTTCATGCAGGCCGATAGTTCTACATCGAGGACTTATGGTGGGACCGGAATAGGATTAAGCATTAGCAAATGTCTTGTGGCTCTCATGGATGGAGAGATTGGCTTTGTAAGTGAACCGGGAACTGGAAGTACGTTTTCATTTACGGGGTCTTTTAGAAGAGGGGAAAGTAGTTCCCTTGAAGCAAAAAGGCAGCAGTATGATCCAGATGTGATGGAATGTCGAGGGCAGAAGGCCTTGATAATAGATAATAGCAGTTTACGAGCCGAGGTTACCAAATATTATCTTCATAGATTGGGGATCTCTGTCGATATTGCTTTCAGTCCCGGGCGCATCTACCAGTATCTTTCTAATACCAACAGTGTTTCGAGTGATTTGGCAATGGTACTTATTGACAAAGATGTATGGGACAAAGAAGGGGGTCTGAAATTCCATCACAGTCTAAAAGAGCATGTAGAAAACAGCGAAAAAGAAGCGCGGAAAAGCATTCCGAAGATTTTTCTGTTGGCTACATCTATCAGTCCCAATGAGCGAAACAAGCTAAGGTCGGCAGGACTTCTAAATAATGTAATGATGAAGCCTCTACGATTAAGTGTCATGATCGGTTGCTTCCAAGAGGCGTCGGGAGGCGGTAAGAAGAGACAAATAAATAGAAGGAAACCATCTACACTTGGGACCTTACTCAGAGGAAAGAACATTTTGGTGGTGGATGATAATGTAGTCAACAGAAGAGTTGCAGAAGGTGCTCTGAAGAAATATGGAGCGGTTGTCACCTGCGTGGAAAGCGGCCGAGATGCTCTTTCCATGCTTAAACCACCCCACAAATTCGACGCATGTTTTATGGATCTTCAGATGCCAGAGATGGATGGGTACTTTGAAGCAACAAGGCAAATCCGACGATTGGAAAGAGAGGCTAACGATAAAATTGCTTCCGGAGAAGCATCAATTGAGATGTTTGGAAATGTGGCCCATTGGTACACACCAATATTGGCCATGACTGCAGATGTAATTCAAGCTACAAATGAAGAGTGTATGAAGTGCGGGATGAATGATTACGTATCAAAGCCGTTCGCCGAAGAACAACTCTATGCAGCCGTTTCACGTTTCTTTGAGTCTGGCTGA 3843 42.28 TLMSCSSGAKSLLKLSKLFVKIQRWILMGMAQNCKFCVSCGKVSAGFRLKKAKEDGNVHSSITGWKRKVLVLCAVGLVFIFSICFFWSSFDGSWTSKQKPLSSFGGKTENFLQHFNVSNNHLLFLSSLFAKSDQIVSIQCTKGSSPDMHIKNGISCALKVLSSEELLVRHDQLIEEHLKSNDQCPILGEKIPNYFDQSLSHNKRMLASDSLISSKPTDIHSFGKKILQTRGFPSCAKDCCESLCSLVKGSLWVIFGVIIYQMIPCFDLKLWWIQNELVDQNIQQQPVANQVSSQQKQQKVFPQQVQPHHAKNPPKGAGKWRKKLLLLFVLLGVITSVWLFWDLNSKINLRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAMNQKIFGEYTERTAFERPLTSGVAYALRVNHSERDIFEKRHGWTIKKMETEDQTLVRDCIPESLDPAPIQKEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNKELPPNATPDQRVEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNDSSPIKMYGSDFTDTGLLQVSNLDFGDPQRKHEMHCRFKQKPTLPWTAINASVAVLVITLLVGHIFHAAICQIAEVENDYRVMTELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTDLDEEQLDYAYTAHDSGESLISLINEVLDQAKIESGRLELESVPFDLRAVLDNALSLFSGKSNEKRIELAVYVSSLVPEVVIGDPGRFRQIITNLVGNSIKFTHNKGHIFISVHLADEVLGPLEHMDKVLRQGLSLVKDTSSNTYNTLSGFPVVNRWKSWKLFKNFCRTDATEHSDMIKLLVTVEDTGVGIALNAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVALMDGEIGFVSEPGTGSTFSFTGSFRRGESSSLEAKRQQYDPDVMECRGQKALIIDNSSLRAEVTKYYLHRLGISVDIAFSPGRIYQYLSNTNSVSSDLAMVLIDKDVWDKEGGLKFHHSLKEHVENSEKEARKSIPKIFLLATSISPNERNKLRSAGLLNNVMMKPLRLSVMIGCFQEASGGGKKRQINRRKPSTLGTLLRGKNILVVDDNVVNRRVAEGALKKYGAVVTCVESGRDALSMLKPPHKFDACFMDLQMPEMDGYFEATRQIRRLEREANDKIASGEASIEMFGNVAHWYTPILAMTADVIQATNEECMKCGMNDYVSKPFAEEQLYAAVSRFFESG 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6969439 6976890 + Bda001517.1 Bda13g00598 18729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00598 1280 Pfam Response regulator receiver domain 1140 1273 IPR001789 GO:0000160
Bda13g00598 1280 PANTHER HISTIDINE KINASE 2 309 1279 - -
Bda13g00598 1280 PRINTS Bacterial sensor protein C-terminal signature 886 900 IPR004358 GO:0016310|GO:0016772
Bda13g00598 1280 PRINTS Bacterial sensor protein C-terminal signature 904 914 IPR004358 GO:0016310|GO:0016772
Bda13g00598 1280 PRINTS Bacterial sensor protein C-terminal signature 921 939 IPR004358 GO:0016310|GO:0016772
Bda13g00598 1280 PRINTS Bacterial sensor protein C-terminal signature 945 958 IPR004358 GO:0016310|GO:0016772
Bda13g00598 1280 ProSiteProfiles Histidine kinase domain profile. 684 961 IPR005467 -
Bda13g00598 1280 SUPERFAMILY CheY-like 981 1113 IPR011006 -
Bda13g00598 1280 Gene3D - 648 740 - -
Bda13g00598 1280 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 663 743 IPR036097 GO:0000155|GO:0007165
Bda13g00598 1280 ProSiteProfiles Response regulatory domain profile. 1139 1277 IPR001789 GO:0000160
Bda13g00598 1280 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 789 956 IPR003594 -
Bda13g00598 1280 Pfam His Kinase A (phospho-acceptor) domain 677 742 IPR003661 GO:0000155|GO:0007165
Bda13g00598 1280 Gene3D CHASE domain 396 623 IPR042240 -
Bda13g00598 1280 ProSiteProfiles Response regulatory domain profile. 985 1115 IPR001789 GO:0000160
Bda13g00598 1280 SMART HisKA_10 677 742 IPR003661 GO:0000155|GO:0007165
Bda13g00598 1280 SMART HKATPase_4 789 961 IPR003594 -
Bda13g00598 1280 SMART REC_2 1138 1273 IPR001789 GO:0000160
Bda13g00598 1280 CDD HATPase_EvgS-ArcB-TorS-like 794 956 - -
Bda13g00598 1280 CDD HisKA 677 738 IPR003661 GO:0000155|GO:0007165
Bda13g00598 1280 Gene3D - 978 1116 - -
Bda13g00598 1280 Gene3D - 1133 1279 - -
Bda13g00598 1280 Gene3D - 741 961 IPR036890 -
Bda13g00598 1280 SUPERFAMILY CheY-like 1135 1277 IPR011006 -
Bda13g00598 1280 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 731 956 IPR036890 -
Bda13g00598 1280 SMART CHASE_2 392 591 IPR006189 -
Bda13g00598 1280 CDD REC_hyHK_CKI1_RcsC-like 1140 1273 - -
Bda13g00598 1280 Gene3D - 343 395 - -
Bda13g00598 1280 PANTHER TWO-COMPONENT HISTIDINE KINASE 309 1279 - -
Bda13g00598 1280 ProSiteProfiles CHASE domain profile. 392 616 IPR006189 -
Bda13g00598 1280 Pfam CHASE domain 396 589 IPR006189 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00649 Bda-Chr1:33503972 Bda13g00598 Bda-Chr13:6969439 3.20E-46 dispersed
Bda03g00959 Bda-Chr3:8683971 Bda13g00598 Bda-Chr13:6969439 2.55E-59 dispersed
Bda08g00185 Bda-Chr8:1682902 Bda13g00598 Bda-Chr13:6969439 0 dispersed
Bda11g01830 Bda-Chr11:53535758 Bda13g00598 Bda-Chr13:6969439 5.80E-12 dispersed
Bda13g00079 Bda-Chr13:1011258 Bda13g00598 Bda-Chr13:6969439 1.09E-09 dispersed
Bda13g00598 Bda-Chr13:6969439 Bda14g00969 Bda-Chr14:7798251 2.02E-39 dispersed
Bda13g00598 Bda-Chr13:6969439 Bda06g00425 Bda-Chr6:6342596 6.37E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16890 PF03924 CHASE 5.30E-33 CL0165 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00598 K14489 - zju:107406671 1633.62