Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda13g00610 | CCAGAAGCAGAAGTGATAGCTTTATCGCCGAAGACTCTAATGGCGACCAACAGATTCGTGTGTGAAATATGCGGGAAGGGTTTTCAGAGAGATCAAAACCTTCAACTTCATAGAAGAGGACATAATCTACCATGGAAGCTTAAGCAGAGAAGCAGCACAGAGGTGAGAAAGAGAGTTTACGTCTGCCCAGAAAAGAACTGCGTTCATCATCACCCATCCAGGGCTCTTGGCGACCTAACTGGAATCAAAAAGCACTTCTGCAGAAAACATGGGGAGAAGAAATGGAAGTGCGAGAAATGCTCTAAACGATACGCTGTTCAGTCGGACTGGAAAGCTCACTCGAAAACCTGTGGAACTAGAGAGTATAAGTGCGACTGTGGAGCTATATTTTCACGGAGAGACAGTTTCATCACTCACAGAGCTTTCTGTGACGCACTAGCAGAAGAAACAGCTCGAGTGAATGAAAACTCGCAGTTGATAATCGGCAATCGATCTCAATCAATGGAGGTCAACTATAAAAACCACAATAATCACGATCAAGTTCATCAACAAGGGTTCCTCAGTTCAGGCTCAATTTTCAGTTATCCTCTACCGTTTGATTATCAGTCAAACTGGATTCTTGGATCTAAGTTTTCATCGGAAAAGGCTCTGAATGAAGAGCTAACCAGTACCTCTGTTCCATTTGATAGTATAACAGAAGGAGGAGCTCAGTTAGTTAGCGTATCTTCCTTATTCAGTCAAGATCATCAATCTCATTGTAGAAGTACTCTTCAAGATAATATGTCAGCCACTGCTTTGCTGCAAAAAGCTGCTGAAATTGGAGCAACTTCCAGCGACCCATTATTGACTGGGTTAAAGAGCAGTGAAAGTTCAGTTCAAGAAGGGAGCAGAATCAGTGGATTTTATGGTTCAACTTACTCCATAGCCAGTAGTTTTGGAGGAAAAGATATGGAGGACCCATCAGGAAATCTGGTGCTGAATTATCCTGCAAAACGCAGAGCAATTCAGATTGAAGAGAGTCCAAAAGGAGGAGGACAAACTAGAGATTTTCTTGGCGTTGGCGTACAAACCCTCTGCCACCCTTCATCAATCAATCGATGGATTTGA | 1107 | 43.0 | PEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSTEVRKRVYVCPEKNCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGAIFSRRDSFITHRAFCDALAEETARVNENSQLIIGNRSQSMEVNYKNHNNHDQVHQQGFLSSGSIFSYPLPFDYQSNWILGSKFSSEKALNEELTSTSVPFDSITEGGAQLVSVSSLFSQDHQSHCRSTLQDNMSATALLQKAAEIGATSSDPLLTGLKSSESSVQEGSRISGFYGSTYSIASSFGGKDMEDPSGNLVLNYPAKRRAIQIEESPKGGGQTRDFLGVGVQTLCHPSSINRWI | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7117099 | 7118647 | + | Bda001528.1 | Bda13g00610 | 18741 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda13g00610 | 368 | PANTHER | F-BOX ASSOCIATED PROTEIN | 172 | 365 | - | - | |
| Bda13g00610 | 368 | Gene3D | Classic Zinc Finger | 53 | 143 | - | - | |
| Bda13g00610 | 368 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 21 | 41 | IPR013087 | - | |
| Bda13g00610 | 368 | Gene3D | Classic Zinc Finger | 15 | 42 | - | - | |
| Bda13g00610 | 368 | SMART | c2h2final6 | 95 | 115 | IPR013087 | - | |
| Bda13g00610 | 368 | SMART | c2h2final6 | 60 | 90 | IPR013087 | - | |
| Bda13g00610 | 368 | SMART | c2h2final6 | 19 | 41 | IPR013087 | - | |
| Bda13g00610 | 368 | SUPERFAMILY | beta-beta-alpha zinc fingers | 18 | 115 | IPR036236 | - | |
| Bda13g00610 | 368 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 19 | 41 | IPR013087 | - | |
| Bda13g00610 | 368 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 171 | - | - | |
| Bda13g00610 | 368 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 172 | 365 | - | - | |
| Bda13g00610 | 368 | PANTHER | F-BOX ASSOCIATED PROTEIN | 1 | 171 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda12g01070 | Bda-Chr12:42429856 | Bda13g00610 | Bda-Chr13:7117099 | 8.58E-107 | dispersed | |
| Bda13g00610 | Bda-Chr13:7117099 | Bda06g00391 | Bda-Chr6:6094050 | 3.71E-30 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16893 | None | None | None | None | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda13g00610 | K25870 | - | qsu:112011855 | 476.863 |